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tox.ini
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# File: tox.ini (Templated version)
#
[local_settings]
# project specific local settings
test_pattern_1 = "test*.py"
test_pattern_2 = ""
test_pattern_3 = ""
test_pattern_4 = ""
#
fixture_pattern_1 = "fixtureD*.py"
fixture_pattern_2 = "fixtureP*.py"
fixture_pattern_3 = ""
#
# Source pathls (unquoted and space separated list of files/directories) for linting and format checks
source_paths = rcsb/exdb setup.py
#
# Start directory path for test discovery
# Each path must reference valid directory that is searchable by Python (i.e. contains __init__.py)
# ** It is harmless to point to paths containing no tests.
#
fixture_path_1 = "rcsb/exdb/tests"
fixture_path_2 = "rcsb/exdb/tests"
fixture_path_3 = ""
test_path_1 = "rcsb/exdb/tests"
# These are placeholders valid source directories without tests files
test_path_2 = ""
test_path_3 = ""
test_path_4 = ""
#
# Comma separate list of directories for which test coverage will be evaluated
coverage_source_paths = "rcsb/exdb"
coverage_exclude_paths = "rcsb/exdb/cli/*,rcsb/exdb/examples-seq/*"
coverage_cutoff = 75
#
## --------------------------------------------------------------------------
## ---------- No project specific setting beyond this point --------------
# Updated: 3-Jul-2019 jdw Cleanup
# 8-Jul-2019 jdw Disable flake8 plugin (pydocstyle compat issue)
# 12-Jul-2019 jdw Add placeholders for up to four test paths
# 13-Jul-2019 jdw Add coverage exclusion
# 4-Sep-2019 jdw Add fixture option to establish cache state
# 4-Sep-2019 jdw Add support for multiple fixtures (3)
# 11-Dec-2019 jdw Py38 version
# 9-Jan-2023 aae updates for tox 4
# 16-Oct-2024 dwp Py310
#
##
[tox]
# The complete list of supported test environments to setup and invoke
envlist = format_pep8-{py310}, lint_pylint-{py310}, format_black-{py310}, test_coverage-{py310}
#
minversion = 3.4.0
skip_missing_interpreters = true
skipsdist = false
[testenv]
passenv = CONFIG_SUPPORT_TOKEN_ENV,OE_LICENSE
allowlist_externals = echo
commands =
echo "Starting default tests in testenv"
basepython = py310: python3.10
[testenv:py310]
description = 'Run unit tests (unittest runner) using {envpython}'
platform=
macos: darwin
linux: linux
skip_install = false
recreate = true
alwayscopy=true
package = editable-legacy
deps =
-r requirements.txt
commands =
echo "Starting {envname}"
{envpython} -V
{envpython} -m unittest discover -v --start-directory {[local_settings]fixture_path_1} --pattern "{[local_settings]fixture_pattern_1}"
{envpython} -m unittest discover -v --start-directory {[local_settings]fixture_path_2} --pattern "{[local_settings]fixture_pattern_2}"
#{envpython} -m unittest discover -v --start-directory {[local_settings]fixture_path_3} --pattern "{[local_settings]fixture_pattern_3}"
{envpython} -m unittest discover -v --start-directory {[local_settings]test_path_1} --pattern "{[local_settings]test_pattern_1}"
#{envpython} -m unittest discover -v --start-directory {[local_settings]test_path_2} --pattern "{[local_settings]test_pattern_2}"
#{envpython} -m unittest discover -v --start-directory {[local_settings]test_path_3} --pattern "{[local_settings]test_pattern_3}"
#{envpython} -m unittest discover -v --start-directory {[local_settings]test_path_4} --pattern "{[local_settings]test_pattern_4}"
echo "Completed {envname}"
#
[testenv:format_pep8-py310]
description = 'Run selected PEP8 compliance checks (flake8)'
platform=
macos: darwin
linux: linux
deps =
flake8
# This plugin is no longer compatible with latest pydocstyles -
# flake8-docstrings>=0.2.7
flake8-import-order>=0.9
-r requirements.txt
commands =
# Exceptions: D for docstrings, I for imports order and formatting, E302 is slice spacing - W503 multiline spacing incompatible with black
flake8 --max-line-length=185 --ignore=D,I,E203,W503 {[local_settings]source_paths}
#
[testenv:lint_pylint-py310]
description = 'Run linting compliance checks (pylint)'
platform=
macos: darwin
linux: linux
deps =
pylint
-r requirements.txt
commands =
echo "Starting {envname}"
pylint --disable=R,C --reports=n --rcfile={toxinidir}/pylintrc {[local_settings]source_paths}
echo "Completed {envname}"
#
[testenv:format_black-py310]
description = 'Run format compliance checks (black)'
platform=
macos: darwin
linux: linux
deps =
black>=21.5b1
-r requirements.txt
# isort>=4.3.20
commands =
echo "Starting {envname}"
black --check --line-length 185 {[local_settings]source_paths}
# isort -rc rcsb/utils --check-only
echo "Completed {envname}"
#
[testenv:test_coverage-py310]
description = 'Run test coverage analysis'
platform=
macos: darwin
linux: linux
recreate = true
alwayscopy=true
package = editable-legacy
deps =
coverage
-r requirements.txt
commands =
echo "Starting {envname}"
coverage erase
coverage run --parallel-mode --omit="{[local_settings]coverage_exclude_paths}" --source="{[local_settings]coverage_source_paths}" -m unittest discover -v --start-directory {[local_settings]fixture_path_1} --pattern "{[local_settings]fixture_pattern_1}"
coverage run --parallel-mode --omit="{[local_settings]coverage_exclude_paths}" --source="{[local_settings]coverage_source_paths}" -m unittest discover -v --start-directory {[local_settings]fixture_path_2} --pattern "{[local_settings]fixture_pattern_2}"
# coverage run --parallel-mode --omit="{[local_settings]coverage_exclude_paths}" --source="{[local_settings]coverage_source_paths}" -m unittest discover -v --start-directory {[local_settings]fixture_path_3} --pattern "{[local_settings]fixture_pattern_3}"
coverage run --parallel-mode --omit="{[local_settings]coverage_exclude_paths}" --source="{[local_settings]coverage_source_paths}" -m unittest discover -v --start-directory {[local_settings]test_path_1} --pattern "{[local_settings]test_pattern_1}"
# coverage run --parallel-mode --omit="{[local_settings]coverage_exclude_paths}" --source="{[local_settings]coverage_source_paths}" -m unittest discover -v --start-directory {[local_settings]test_path_2} --pattern "{[local_settings]test_pattern_2}"
#coverage run --parallel-mode --omit="{[local_settings]coverage_exclude_paths}" --source="{[local_settings]coverage_source_paths}" -m unittest discover -v --start-directory {[local_settings]test_path_3} --pattern "{[local_settings]test_pattern_3}"
#coverage run --parallel-mode --omit="{[local_settings]coverage_exclude_paths}" --source="{[local_settings]coverage_source_paths}" -m unittest discover -v --start-directory {[local_settings]test_path_4} --pattern "{[local_settings]test_pattern_4}"
echo " ------- Consolidating {envname} data ----------"
coverage combine
echo " ------- Building {envname} reports ----------"
coverage report --fail-under={[local_settings]coverage_cutoff}
- coverage xml
echo "Completed {envname}"