diff --git a/404.html b/404.html index 536d742..01c80c9 100644 --- a/404.html +++ b/404.html @@ -8,8 +8,8 @@
Package: MsBackendMgfAuthors: RforMassSpectrometry Package Maintainer [cre], -Laurent Gatto [aut] (https://orcid.org/0000-0002-1520-2268), Johannes Rainer -[aut] (https://orcid.org/0000-0002-6977-7147), Sebastian Gibb -[aut] (https://orcid.org/0000-0001-7406-4443), Michael Witting -[ctb] (https://orcid.org/0000-0002-1462-4426), Adriano Rutz -[ctb] (https://orcid.org/0000-0003-0443-9902)Last modified: 2024-09-27 12:24:48.429027Compiled: Fri Sep 27 12:29:40 2024
Package: MsBackendMgfAuthors: RforMassSpectrometry Package Maintainer [cre], +Laurent Gatto [aut] (ORCID: https://orcid.org/0000-0002-1520-2268), Johannes Rainer +[aut] (ORCID: https://orcid.org/0000-0002-6977-7147), Sebastian Gibb +[aut] (ORCID: https://orcid.org/0000-0001-7406-4443), Michael Witting +[ctb] (ORCID: https://orcid.org/0000-0002-1462-4426), Adriano Rutz +[ctb] (ORCID: https://orcid.org/0000-0003-0443-9902)Last modified: 2024-11-20 09:38:04.795711Compiled: Wed Nov 20 09:47:47 2024
The Spectra +
The Spectra package provides a central infrastructure for the handling of Mass Spectrometry (MS) data. The package supports interchangeable use of different backends to import MS data from a variety of sources -(such as mzML files). The MsBackendMgf +(such as mzML files). The MsBackendMgf package allows the import of MS/MS data from mgf (Mascot Generic Format) files. This vignette illustrates the usage of the MsBackendMgf package.
sessionInfo()
## R version 4.4.1 (2024-06-14) +## R Under development (unstable) (2024-11-13 r87330) ## Platform: x86_64-pc-linux-gnu -## Running under: Ubuntu 22.04.4 LTS +## Running under: Ubuntu 24.04.1 LTS ## ## Matrix products: default ## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 -## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0 +## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0 ## ## locale: ## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C @@ -348,23 +348,24 @@ Session information## [8] base ## ## other attached packages: -## [1] MsBackendMgf_1.13.0 Spectra_1.15.10 BiocParallel_1.39.0 -## [4] S4Vectors_0.43.2 BiocGenerics_0.51.1 BiocStyle_2.33.1 +## [1] MsBackendMgf_1.15.1 Spectra_1.15.13 BiocParallel_1.41.0 +## [4] S4Vectors_0.45.2 BiocGenerics_0.53.3 generics_0.1.3 +## [7] BiocStyle_2.35.0 ## ## loaded via a namespace (and not attached): -## [1] cli_3.6.3 knitr_1.48 rlang_1.1.4 -## [4] xfun_0.47 ProtGenerics_1.37.1 textshaping_0.4.0 -## [7] clue_0.3-65 jsonlite_1.8.9 htmltools_0.5.8.1 -## [10] ragg_1.3.3 sass_0.4.9 rmarkdown_2.28 -## [13] evaluate_1.0.0 jquerylib_0.1.4 MASS_7.3-61 -## [16] fastmap_1.2.0 IRanges_2.39.2 yaml_2.3.10 -## [19] lifecycle_1.0.4 bookdown_0.40 MsCoreUtils_1.17.2 -## [22] BiocManager_1.30.25 cluster_2.1.6 compiler_4.4.1 -## [25] codetools_0.2-20 fs_1.6.4 htmlwidgets_1.6.4 -## [28] MetaboCoreUtils_1.13.0 systemfonts_1.1.0 digest_0.6.37 -## [31] R6_2.5.1 parallel_4.4.1 bslib_0.8.0 -## [34] tools_4.4.1 pkgdown_2.1.1.9000 cachem_1.1.0 -## [37] desc_1.4.3 +## [1] jsonlite_1.8.9 compiler_4.5.0 BiocManager_1.30.25 +## [4] parallel_4.5.0 cluster_2.1.6 jquerylib_0.1.4 +## [7] systemfonts_1.1.0 IRanges_2.41.1 textshaping_0.4.0 +## [10] yaml_2.3.10 fastmap_1.2.0 R6_2.5.1 +## [13] ProtGenerics_1.37.1 knitr_1.49 htmlwidgets_1.6.4 +## [16] MASS_7.3-61 bookdown_0.41 desc_1.4.3 +## [19] bslib_0.8.0 rlang_1.1.4 cachem_1.1.0 +## [22] xfun_0.49 fs_1.6.5 MsCoreUtils_1.17.3 +## [25] sass_0.4.9 cli_3.6.3 pkgdown_2.1.1.9000 +## [28] digest_0.6.37 MetaboCoreUtils_1.15.0 lifecycle_1.0.4 +## [31] clue_0.3-66 evaluate_1.0.1 codetools_0.2-20 +## [34] ragg_1.3.3 rmarkdown_2.29 tools_4.5.0 +## [37] htmltools_0.5.8.1
## R Under development (unstable) (2024-11-13 r87330) ## Platform: x86_64-pc-linux-gnu -## Running under: Ubuntu 22.04.4 LTS +## Running under: Ubuntu 24.04.1 LTS ## ## Matrix products: default ## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 -## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0 +## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0 ## ## locale: ## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C @@ -348,23 +348,24 @@ Session information## [8] base ## ## other attached packages: -## [1] MsBackendMgf_1.13.0 Spectra_1.15.10 BiocParallel_1.39.0 -## [4] S4Vectors_0.43.2 BiocGenerics_0.51.1 BiocStyle_2.33.1 +## [1] MsBackendMgf_1.15.1 Spectra_1.15.13 BiocParallel_1.41.0 +## [4] S4Vectors_0.45.2 BiocGenerics_0.53.3 generics_0.1.3 +## [7] BiocStyle_2.35.0 ## ## loaded via a namespace (and not attached): -## [1] cli_3.6.3 knitr_1.48 rlang_1.1.4 -## [4] xfun_0.47 ProtGenerics_1.37.1 textshaping_0.4.0 -## [7] clue_0.3-65 jsonlite_1.8.9 htmltools_0.5.8.1 -## [10] ragg_1.3.3 sass_0.4.9 rmarkdown_2.28 -## [13] evaluate_1.0.0 jquerylib_0.1.4 MASS_7.3-61 -## [16] fastmap_1.2.0 IRanges_2.39.2 yaml_2.3.10 -## [19] lifecycle_1.0.4 bookdown_0.40 MsCoreUtils_1.17.2 -## [22] BiocManager_1.30.25 cluster_2.1.6 compiler_4.4.1 -## [25] codetools_0.2-20 fs_1.6.4 htmlwidgets_1.6.4 -## [28] MetaboCoreUtils_1.13.0 systemfonts_1.1.0 digest_0.6.37 -## [31] R6_2.5.1 parallel_4.4.1 bslib_0.8.0 -## [34] tools_4.4.1 pkgdown_2.1.1.9000 cachem_1.1.0 -## [37] desc_1.4.3
Gatto L, Rainer J, Gibb S (2024). MsBackendMgf: Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files. -R package version 1.13.0, https://github.com/RforMassSpectrometry/MsBackendMgf. +R package version 1.15.1, https://github.com/RforMassSpectrometry/MsBackendMgf.
@Manual{, title = {MsBackendMgf: Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files}, author = {Laurent Gatto and Johannes Rainer and Sebastian Gibb}, year = {2024}, - note = {R package version 1.13.0}, + note = {R package version 1.15.1}, url = {https://github.com/RforMassSpectrometry/MsBackendMgf}, }
NEWS.md