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The 21st and 22nd amino acids selenocysteine (U) and pyrrolysine (O) are not supported in PSMatch. NA's are thus introduced in generated theoretical fragments.
This is a small issue that rarely occurs, but it happened to me and I thought it might be interesting to add their masses/characteristics into calculateFragments / getAminoAcids.
The text was updated successfully, but these errors were encountered:
I don't think that adding two rows to the getAminoAcids() data.frame would have a detrimental impact on anything, so even if the gain of adding U and O is minimal, there's no real disadvantage.
@sgibb - what do you think? If you are OK, I suggest that @guideflandre sends a PR with the two extra lines/aa.
The 21st and 22nd amino acids selenocysteine (U) and pyrrolysine (O) are not supported in PSMatch. NA's are thus introduced in generated theoretical fragments.
This is a small issue that rarely occurs, but it happened to me and I thought it might be interesting to add their masses/characteristics into
calculateFragments
/getAminoAcids
.The text was updated successfully, but these errors were encountered: