- Revamp some configs for maintenance (readthedocs, pyproject.toml)
- Now uses tqdm for the progress bar
- Moved the main script to a proper entrypoint instead of an added file
- This changes nothing in the way the script is called but just makes it more robust on Windows
- Change the main script name from get_distribution to autodmri_get_distribution for consistency with the package name.
- Remove python 2.7 support.
- Fix some deprecation warnings from numpy.
- Remove nans from the output when using noise maps.
- Fix the main script regarding the noise maps to 4D conversion.
- Remove Dockerfile.
- Fix an indexing bug for noise maps when going over the full data (the default).
- Pad 3D noise maps to 4D automatically in the main script.
- Add new option --fast_median to reduce time and memory usage for large datasets such as the HCP datasets.
- Add journal manuscript reference.
- Bugfix: Remove non ascii char in get_distribution for python 2.
- Bugfix: Use io.open for backward compatibility in python 2.7 for setup.py.
- Now using joblib for the multiprocessing backend
- When selecting overlapping noise maps measurements without subsampling (option --noise_maps), values are now averaged for each overlapping voxel.
- New fancy example available at https://github.com/samuelstjean/autodmri/tree/master/example
The first release.
To install, download the file and run in your favorite terminal
pip install autodmri-0.1.tar.gz