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Duplicate XEC branch on usher #2375

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xz-keg opened this issue Jan 19, 2025 · 2 comments
Open

Duplicate XEC branch on usher #2375

xz-keg opened this issue Jan 19, 2025 · 2 comments
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Usher Issues with usher related problems

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@xz-keg
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xz-keg commented Jan 19, 2025

@AngieHinrichs, there seems to be a second XEC branch on recent usher trees derived via KP.3 plus multiple flip-flops.

It eventually result in same mutations as XEC and starts attracting XEC seqs. Both XEC.2 seqs and XEC+Orf1a:A599T seqs are attracted.

This needs fix.

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice96_genome_test_3d266_cb7590.json?label=id:node_5762563

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@xz-keg xz-keg added the Usher Issues with usher related problems label Jan 19, 2025
@xz-keg xz-keg changed the title Second XEC branch on usher Duplicate XEC branch on usher Jan 19, 2025
@Over-There-Is
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And all XEC.2 sequences are placed on it and not identified as XEC.2.

@AngieHinrichs
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Thanks for reporting that! Should be fixed in tomorrow's build (2025-01-24).

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