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README.txt
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README.txt
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SBMLToolbox
Sarah Keating
http://www.sbml.org
mailto:[email protected]
----------------
1. Introduction
----------------
SBMLToolbox is an open-source MATLAB/Octave toolbox that provides
both MATLAB and Octave users with functions for reading, writing
and manipulation data expressed
in the Systems Biology Markup Language (SBML).
It works on Windows, Linux, and MacOS systems.
The SBMLToolbox supports reading and writing of all levels
and versions of SBML up to L3V1 Core.
----------------
2. Installation
----------------
**************************************************************
IMPORTANT: You must have installed libSBML with the MATLAB/Octave
binding prior to installation of SBMLToolbox.
**************************************************************
Start MATLAB or Octave.
Navigate to the SBMLToolbox/toolbox directory.
Run the script 'install.m' found in that dirctory.
This will look for the libSBML binding and report whether it
can be found. In addition, it will add the directories from the
toolbox to the Path.
------------
3. Contents
------------
toolbox\AccessModel
This directory contains functions that allow the user to
derive information from an SBML Model
toolbox\Convenience
This directory contains a number of convenience functions for
checking information or manipulating math expressions.
toolbox\MATLAB_SBML_Structure_Functions
This directory contains functions that allow the user to
manipulate a MATLAB_SBML Model structure
The majority of functions mimic their equivalent within the
libSBML C API.
toolbox\Simulation
This directory contains functions to simulate an SBML model
toolbox\Validate_MATLAB_SBML_Structures
This directory contains functions to validate the MATLAB_SBML
structures
------------------------------------------
4. Licensing, Copyrights and Distribution
------------------------------------------
The terms of redistribution for this software are stated in the file
COPYING.txt.
-------------------------------------------
File author: S. Keating
Last Modified: 2011-03-21
-------------------------------------------