From 4f93c64593bf3ab0ee8ba9aa34c36b69cbe30304 Mon Sep 17 00:00:00 2001 From: falexwolf Date: Mon, 5 Nov 2018 02:29:43 +0000 Subject: [PATCH] error message for paga_path regarding dpt 2 --- scanpy/plotting/tools/paga.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scanpy/plotting/tools/paga.py b/scanpy/plotting/tools/paga.py index 2409d698bd..5e2013db62 100644 --- a/scanpy/plotting/tools/paga.py +++ b/scanpy/plotting/tools/paga.py @@ -866,7 +866,7 @@ def paga_path( groups_key = adata.uns['paga']['groups'] groups_names = adata.obs[groups_key].cat.categories - if 'dpt_pseudotime' is not adata.obs.keys(): + if 'dpt_pseudotime' not in adata.obs.keys(): raise ValueError( '`pl.paga_path` requires computation of a pseudotime `tl.dpt` ' 'for ordering at single-cell resolution')