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Add scran nomalisation into scanpy #3255

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le-ander opened this issue Sep 23, 2024 · 2 comments
Open

Add scran nomalisation into scanpy #3255

le-ander opened this issue Sep 23, 2024 · 2 comments
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Area – Preprocessing 🧼 Enhancement ✨

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@le-ander
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What kind of feature would you like to request?

New analysis tool: A simple analysis tool you have been using and are missing in sc.tools?

Please describe your wishes

As previously attempted (#823), it would be amazing to have scran normalisation implemented in scanpy.
It's one of the best practices and for many simple analysis workflows, it might even be the only step currently requiring to switch to R.
@le-ander le-ander added Enhancement ✨ Triage 🩺 This issue needs to be triaged by a maintainer labels Sep 23, 2024
@Marwansha
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Marwansha commented Sep 23, 2024 •
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fyi there is scranpy available i have been using it for a while

@flying-sheep
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Do you mean scranPY?

@flying-sheep flying-sheep added Area – Preprocessing 🧼 and removed Triage 🩺 This issue needs to be triaged by a maintainer labels Sep 24, 2024
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@flying-sheep @le-ander @Marwansha