Notebooks tailored to showcase specific functionalities of the SpatialData ecosystem.
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.. grid-item::
.. container:: custom-card
.. image:: _static/img/models1.png
:target: notebooks/examples/models1.html
.. toctree::
:maxdepth: 1
notebooks/examples/models1.ipynb
.. grid-item::
.. container:: custom-card
.. image:: _static/img/models2.png
:target: notebooks/examples/models2.html
.. toctree::
:maxdepth: 1
notebooks/examples/models2.ipynb
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.. container:: custom-card
.. image:: _static/img/transformations.jpg
:target: notebooks/examples/transformations.html
.. toctree::
:maxdepth: 1
notebooks/examples/transformations.ipynb
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.. container:: custom-card
.. image:: _static/img/spatial_query.jpg
:target: notebooks/examples/spatial_query.html
.. toctree::
:maxdepth: 1
notebooks/examples/spatial_query.ipynb
.. grid-item::
.. container:: custom-card
.. image:: _static/img/napari_rois.jpg
:target: notebooks/examples/napari_rois.html
.. toctree::
:maxdepth: 1
notebooks/examples/napari_rois.ipynb
.. grid-item::
.. container:: custom-card
.. image:: _static/img/alignment_using_landmarks.png
:target: notebooks/examples/alignment_using_landmarks.html
.. toctree::
:maxdepth: 1
notebooks/examples/alignment_using_landmarks.ipynb
.. grid-item::
.. container:: custom-card
.. image:: _static/img/table.png
:target: notebooks/examples/tables.html
.. toctree::
:maxdepth: 1
notebooks/examples/tables.ipynb
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.. container:: custom-card
.. image:: _static/img/aggregation.jpg
:target: notebooks/examples/aggregation.html
.. toctree::
:maxdepth: 1
notebooks/examples/aggregation.ipynb
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.. container:: custom-card
.. image:: _static/img/interchangeability_labels_polygons.png
:target: notebooks/examples/labels_shapes_interchangeability.html
.. toctree::
:maxdepth: 1
notebooks/examples/labels_shapes_interchangeability.ipynb
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.. container:: custom-card
.. image:: _static/img/squidpy_integration.jpg
:target: notebooks/examples/squidpy_integration.html
.. toctree::
:maxdepth: 1
notebooks/examples/squidpy_integration.ipynb
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.. container:: custom-card
.. image:: _static/img/densenet.png
:target: notebooks/examples/densenet.html
.. toctree::
:maxdepth: 1
notebooks/examples/densenet.ipynb
Many different technologies can be visualised out-of-the-box. See below for a couple of examples. See the example datasets for additional technologies represented in SpatialData.
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.. image:: _static/img/visium.png
:target: notebooks/examples/technology_visium.html
.. toctree::
:maxdepth: 1
notebooks/examples/technology_visium.ipynb
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.. container:: custom-card
.. image:: _static/img/mibitof.png
:target: notebooks/examples/technology_mibitof.html
.. toctree::
:maxdepth: 1
notebooks/examples/technology_mibitof.ipynb
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.. container:: custom-card
.. image:: _static/img/merfish.png
:target: notebooks/examples/technology_merfish.html
.. toctree::
:maxdepth: 1
notebooks/examples/technology_merfish.ipynb
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.. container:: custom-card
.. image:: _static/img/cosmx.png
:target: notebooks/examples/technology_cosmx.html
.. toctree::
:maxdepth: 1
notebooks/examples/technology_cosmx.ipynb
.. grid-item::
.. container:: custom-card
.. image:: _static/img/visium_hd.jpg
:target: notebooks/examples/technology_visium_hd.html
.. toctree::
:maxdepth: 1
notebooks/examples/technology_visium_hd.ipynb
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.. container:: custom-card
.. image:: _static/img/xenium.png
:target: notebooks/examples/technology_xenium.html
.. toctree::
:maxdepth: 1
notebooks/examples/technology_xenium.ipynb
Advanced tutorials that showcase more complex functionalities of the SpatialData ecosystem.
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.. container:: custom-card
.. image:: _static/img/speed.png
:target: notebooks/examples/speed_up_illustration.html
.. toctree::
:maxdepth: 1
notebooks/examples/speed_up_illustration.ipynb