Makefile

.PHONY: clean lint format test env report jupyter_pro jupyter_dark jupyter_light

#################################################################################
# GLOBALS                                                                       #
#################################################################################

PROJECT_DIR := $(shell dirname $(realpath $(lastword $(MAKEFILE_LIST))))
PROJECT_NAME = seager19
PYTHON_INTERPRETER = python3
PYTHON_ENV_VERSION = 3.8
ifeq (,$(shell which conda))
HAS_CONDA=False
else
HAS_CONDA=True
endif

#################################################################################
# COMMANDS                                                                      #
#################################################################################

## Delete all compiled Python files and object files
clean:
	find src/ -type f -name "*.py[co]" -delete
	find src/ -type d -name "__pycache__" -delete
	find src/ -type f -name "*.o"

## Lint src directory using flake8
lint:
	pylint --ignore-patterns=lint_test src
	# pylint --ignore-patterns=lint_test atmos
	# flake8 atmos-model
	# flake8 src

## Format src directory using black
format: 
	black atmos
	black src
	black docs

## get report submodule
report:
	git submodule add https://git.overleaf.com/601198e28142a0508a615f15 report

## Test src directory using pylint
test:
	# pytest --pyargs src
	coverage run --source=src -m pytest --durations=0 --pyargs src
	# to update badge: coveralls
	sh .secret.sh

## make the docker image without --no-cache
docker_image:
    DOCKER_BUILDKIT=1 docker build . --build-arg BUILDKIT_INLINE_CACHE=1 --build-arg platform=generic --tag test:test_wo_netcdf 
	
## Set up python interpreter environment and install basic dependencies
env:
ifeq (True,$(HAS_CONDA))
	@echo ">>> Detected conda, creating conda environment."
	
	# Create the conda environment
	conda env create --prefix=./env -f requirements/environment.yml

	@echo ">>> New conda env created. Activate from project directory with:\nconda activate ./env"
else
	@echo ">>> No conda detected. Falling back to virtualenv instead. The python verison will be that of your python3 interpreter."
	$(PYTHON_INTERPRETER) -m pip install -q virtualenv virtualenvwrapper
	@echo ">>> Installing virtualenvwrapper if not already installed.\nMake sure the following lines are in shell startup file\n\
	export WORKON_HOME=$$HOME/.virtualenvs\nexport PROJECT_HOME=$$HOME/Devel\nsource /usr/local/bin/virtualenvwrapper.sh\n"
	@bash -c "source `which virtualenvwrapper.sh`;mkvirtualenv $(PROJECT_NAME) --python=$(PYTHON_INTERPRETER)"
	@echo ">>> New virtualenv created. Activate with:\nworkon $(PROJECT_NAME)"
endif

## Install and set up handy jupyter notebook extensions
jupyter_pro:
	sh ./.setup_scripts/jupyter_tools.sh

## Set up sweet vscode settings
vscode_pro:
	mkdir .vscode
	cp ./.setup_scripts/vscode_settings.jsonc .vscode/settings.json

## jupyter_dark:
jupyter_dark:
	jt -t monokai -f fira -fs 13 -nf ptsans -nfs 11 -N -kl -cursw 5 -cursc r -cellw 95% -T

## jupyter_light:
jupyter_light:
	jt -r

## create a new notebook with default cells:
notebook:
	cp .setup_scripts/default.ipynb notebooks/exploratory/new.ipynb
	mv notebooks/exploratory/new.ipynb notebooks/exploratory/$(name).ipynb
	git add notebooks/exploratory/$(name).ipynb

## create a new python script with default calls:
py:
	cp .setup_scripts/default.py $(name)
	git add ${name}

## create a new python script with default calls:
autodoc:
	cd docs; sh ./get_src.sh; cd ..

#################################################################################
# PROJECT RULES                                                                 #
#################################################################################


#################################################################################
# Self Documenting Commands                                                     #
#################################################################################

.DEFAULT_GOAL := help

# Inspired by <http://marmelab.com/blog/2016/02/29/auto-documented-makefile.html>
# sed script explained:
# /^##/:
# 	* save line in hold space
# 	* purge line
# 	* Loop:
# 		* append newline + line to hold space
# 		* go to next line
# 		* if line starts with doc comment, strip comment character off and loop
# 	* remove target prerequisites
# 	* append hold space (+ newline) to line
# 	* replace newline plus comments by `---`
# 	* print line
# Separate expressions are necessary because labels cannot be delimited by
# semicolon; see <http://stackoverflow.com/a/11799865/1968>
.PHONY: help
help:
	@echo "$$(tput bold)Available rules:$$(tput sgr0)"
	@echo
	@sed -n -e "/^## / { \
		h; \
		s/.*//; \
		:doc" \
		-e "H; \
		n; \
		s/^## //; \
		t doc" \
		-e "s/:.*//; \
		G; \
		s/\\n## /---/; \
		s/\\n/ /g; \
		p; \
	}" ${MAKEFILE_LIST} \
	| LC_ALL='C' sort --ignore-case \
	| awk -F '---' \
		-v ncol=$$(tput cols) \
		-v indent=19 \
		-v col_on="$$(tput setaf 6)" \
		-v col_off="$$(tput sgr0)" \
	'{ \
		printf "%s%*s%s ", col_on, -indent, $$1, col_off; \
		n = split($$2, words, " "); \
		line_length = ncol - indent; \
		for (i = 1; i <= n; i++) { \
			line_length -= length(words[i]) + 1; \
			if (line_length <= 0) { \
				line_length = ncol - indent - length(words[i]) - 1; \
				printf "\n%*s ", -indent, " "; \
			} \
			printf "%s ", words[i]; \
		} \
		printf "\n"; \
	}' \
	| more $(shell test $(shell uname) = Darwin && echo '--no-init --raw-control-chars')