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[delilahmilner]

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[delilahmilner]

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[olgabot]

Hi @delilahmilner, thank you so much for your work!

1. To help us keep track of all the different features across people, next time, can you name the branch something like delilahmilner/featurename, e.g. delilahmilner/bcl2-ced9_p66-cd47_dayhoff?
2. Re "Q: Where does P66 bind CD47? A: 181-187aa" -- this does apply to the dayhoff dataset, too. From the literature, we know that P66 181-187 amino acids are the parts that mimic CD47. It's exciting that k=5 and k=6 dayhoff k-mers show overlap with known P66-CD47 sequences! For k=5 and k=6, can you show the full raw values of query_intersection_positions and match_intersection_positions ?
3. Same for BCL2/Ced9 at k=5 and k=6, can you show the full raw values of query_intersection_positions and match_intersection_positions?
4. I think the next step is fixing the SigSeq bug to deal with non-sequential indices, so we can visualize the alignment between CD47 and P66, can you add that to this PR?

Thank you again!