DESCRIPTION

Package: SpaCeMInD
Type: Package
Title: Spatial Cellular and Molecular Interaction using Deep Learning
Version: 0.1.0
Authors@R: 
  c(person(given = "Shivang",
           family = "Sharma", 
           role = c("aut", "cre"), 
           email = "ssharm55@jhmi.edu", 
           comment = ), 
    person(given = "Jordan",
           family = "Wilson", 
           role = c("aut"), 
           email = "jwils178@jhmi.edu"), 
    person(given = "Hongkai",
           family = "Ji", 
           role = c("aut", "ctb"), 
           email = "hji@jhu.edu"), 
    person(given = "Eugene",
           family = "Shenderov", 
           role = c("aut", "ctb", "cph"), 
           email = "Eugene.Shenderov@jhmi.edu"))
Description: User-friendly tools for analysis and visualization of CosMx SMI 
    data at cellular and subcellular level using conventional scRNA-seq analysis
    tools, in addition to advanced deep learning algorithms.
URL: 
BugReports: 
Depends: 
    R (>= 4.3.0)
Imports: 
    readxl
    writexl
    rstudioapi
    Matrix
    tidyverse
    data.table
    mltools
    DropletUtils
    R.utils
    rhdf5
    tools
    dplyr
    Seurat
    scran
    ggplot2
    ks
    knitr
    ggpubr
    plotly
    RColorBrewer
    SPARK
    EBImage
    ComplexHeatmap
    circlize
    crayon
    ggrepel
    reshape2
    corrr
    FactoMineR
    ggcorrplot
    factoextra
    patchwork
    BiocParallel
    DESeq2
    BiocGenerics
    sp
    SeuratDisk
    
Suggests: 
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 
SystemRequirements: 
Collate: 
    CosMx_functions.R
    QC.R
    data_transformation_functions.R
    file_manipulation.R
    statistical_functions.R
License: MIT + file LICENSE | GPL (>= 3)
Encoding: UTF-8
LazyData: true