DESCRIPTION

Package: cypro
Type: Package
Title: A Toolbox for Analysis of Single Cell Microscopy Data
Version: 0.2.0
Authors@R: as.person(c(
    "Jan Kueckelhaus <jan.kueckelhaus@uniklinik-freiburg.de> [aut, cre]", 
    "Dieter-Henrik Heiland <dr.dieter.henrik.heiland@uniklinik-freiburg.de> [aut]"
  ))
Description: This package provides a framework of functions and shiny applications for handling, analyzing and visualizing multitudes of data files generated via high throughput microscopy. 
Encoding: UTF-8
LazyData: true
License: GPL-3
BugReports: https://github.com/theMILOlab/cypro/issues
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Imports: 
    bbmle,
    cluster,
    english,
    dplyr,
    ggplot2,
    ggpubr,
    glue,
    lubridate,
    readr,
    readxl,
    progress,
    psych,
    purrr,
    stringr,
    stringi,
    tidyr,
    shiny,
    shinybusy,
    shinycssloaders,
    shinydashboard,
    shinydashboardPlus,
    shinyFeedback,
    shinyFiles,
    shinyhelper,
    shinyWidgets,
    shinyjqui
Collate: 
    'S4-documentation.R'
    'add-family.R'
    'animate-family.R'
    'batch-effect-detection.R'
    'check-family.R'
    'checkpoint.R'
    'clustering-hierarchical.R'
    'clustering-initiation.R'
    'clustering-kmeans.R'
    'clustering-pam.R'
    'complete-family.R'
    'compute-family.R'
    'correlation-analysis.R'
    'cypro-modules-computation-aid.R'
    'cypro-modules-miscellaneous.R'
    'cypro-modules.R'
    'default-instructions.R'
    'deprecated.R'
    'dimensional-reduction.R'
    'discard-family.R'
    'documentation-dummies.R'
    'get-family.R'
    'ggplot2-helper.R'
    'helper-family.R'
    'imported-functions.R'
    'loading-and-saving.R'
    'logical-tests.R'
    'miscellaneous.R'
    'mutate-data-frames.R'
    'n-functions.R'
    'normalization.R'
    'object-initiation.R'
    'outlier-detection.R'
    'plot-family-statistics.R'
    'plot-miscellaneous.R'
    'plot-module-migration.R'
    'plot-time-lapse.R'
    'predefined-shiny-widgets.R'
    'print-subset-history.R'
    'print-summary.R'
    'r-objects.R'
    'rename-content.R'
    'set-family.R'
    'set-up-family.R'
    'shiny-functions.R'
    'shiny-html-generating-functions.R'
    'shiny-module-design-experiment-server.R'
    'shiny-module-design-experiment-ui.R'
    'shiny-module-load-data-by-file-server-helper.R'
    'shiny-module-load-data-by-file-server.R'
    'shiny-module-load-data-by-file-ui.R'
    'shiny-module-load-data-server.R'
    'shiny-module-load-data-ui.R'
    'shiny-module-quality-check-server.R'
    'shiny-module-quality-check-ui.R'
    'statistic-functions.R'
    'subset-object.R'
    'summarize-timelapse-data.R'
    'update-cypro-object.R'
    'valid-input-options.R'