From b8ac2242740645165ac8b96d2d3a1c433d444c96 Mon Sep 17 00:00:00 2001 From: JP Date: Fri, 2 Aug 2024 16:36:05 -0700 Subject: [PATCH] updated notebooks to use station --- docs/examples/operate_aurora.ipynb | 2 +- docs/tutorials/processing_configuration.ipynb | 127 ++++++++++-------- 2 files changed, 75 insertions(+), 54 deletions(-) diff --git a/docs/examples/operate_aurora.ipynb b/docs/examples/operate_aurora.ipynb index 67721890..2a1482e6 100644 --- a/docs/examples/operate_aurora.ipynb +++ b/docs/examples/operate_aurora.ipynb @@ -1709,7 +1709,7 @@ } ], "source": [ - "coverage_short_list_columns = [\"survey\", 'station_id', 'run_id', 'start', 'end', ]\n", + "coverage_short_list_columns = [\"survey\", 'station', 'run', 'start', 'end', ]\n", "run_summary.df[coverage_short_list_columns]" ] }, diff --git a/docs/tutorials/processing_configuration.ipynb b/docs/tutorials/processing_configuration.ipynb index 1a051e4b..b3c9b7fa 100644 --- a/docs/tutorials/processing_configuration.ipynb +++ b/docs/tutorials/processing_configuration.ipynb @@ -194,7 +194,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "\u001b[1m2023-11-10T10:19:21.914111-0800 | INFO | mth5.mth5 | close_mth5 | Flushing and closing /home/kkappler/software/irismt/aurora/data/synthetic/mth5/test12rr.h5\u001b[0m\n" + "\u001b[1m2024-08-02T16:15:49.359791-0700 | INFO | mth5.mth5 | close_mth5 | Flushing and closing C:\\Users\\jpeacock\\OneDrive - DOI\\Documents\\GitHub\\aurora\\data\\synthetic\\mth5\\test12rr.h5\u001b[0m\n" ] }, { @@ -219,15 +219,17 @@ " \n", " \n", " survey\n", - " station_id\n", - " run_id\n", + " station\n", + " run\n", " start\n", " end\n", " sample_rate\n", + " n_samples\n", " input_channels\n", " output_channels\n", " channel_scale_factors\n", " valid\n", + " duration\n", " mth5_path\n", " \n", " \n", @@ -240,11 +242,13 @@ " 1980-01-01 00:00:00+00:00\n", " 1980-01-01 11:06:39+00:00\n", " 1.0\n", + " 40000\n", " [hx, hy]\n", " [ex, ey, hz]\n", " {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '...\n", " True\n", - " /home/kkappler/software/irismt/aurora/data/syn...\n", + " 39999.0\n", + " C:\\Users\\jpeacock\\OneDrive - DOI\\Documents\\Git...\n", " \n", " \n", " 1\n", @@ -254,32 +258,34 @@ " 1980-01-01 00:00:00+00:00\n", " 1980-01-01 11:06:39+00:00\n", " 1.0\n", + " 40000\n", " [hx, hy]\n", " [ex, ey, hz]\n", " {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '...\n", " True\n", - " /home/kkappler/software/irismt/aurora/data/syn...\n", + " 39999.0\n", + " C:\\Users\\jpeacock\\OneDrive - DOI\\Documents\\Git...\n", " \n", " \n", "\n", "" ], "text/plain": [ - " survey station_id run_id start \\\n", - "0 none test1 001 1980-01-01 00:00:00+00:00 \n", - "1 none test2 001 1980-01-01 00:00:00+00:00 \n", + " survey station run start end \\\n", + "0 none test1 001 1980-01-01 00:00:00+00:00 1980-01-01 11:06:39+00:00 \n", + "1 none test2 001 1980-01-01 00:00:00+00:00 1980-01-01 11:06:39+00:00 \n", "\n", - " end sample_rate input_channels output_channels \\\n", - "0 1980-01-01 11:06:39+00:00 1.0 [hx, hy] [ex, ey, hz] \n", - "1 1980-01-01 11:06:39+00:00 1.0 [hx, hy] [ex, ey, hz] \n", + " sample_rate n_samples input_channels output_channels \\\n", + "0 1.0 40000 [hx, hy] [ex, ey, hz] \n", + "1 1.0 40000 [hx, hy] [ex, ey, hz] \n", "\n", - " channel_scale_factors valid \\\n", - "0 {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '... True \n", - "1 {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '... True \n", + " channel_scale_factors valid duration \\\n", + "0 {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '... True 39999.0 \n", + "1 {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '... True 39999.0 \n", "\n", " mth5_path \n", - "0 /home/kkappler/software/irismt/aurora/data/syn... \n", - "1 /home/kkappler/software/irismt/aurora/data/syn... " + "0 C:\\Users\\jpeacock\\OneDrive - DOI\\Documents\\Git... \n", + "1 C:\\Users\\jpeacock\\OneDrive - DOI\\Documents\\Git... " ] }, "execution_count": 8, @@ -321,18 +327,19 @@ " \n", " \n", " survey\n", - " station_id\n", - " run_id\n", + " station\n", + " run\n", " start\n", " end\n", " sample_rate\n", + " n_samples\n", " input_channels\n", " output_channels\n", " channel_scale_factors\n", " valid\n", + " duration\n", " mth5_path\n", " remote\n", - " duration\n", " fc\n", " \n", " \n", @@ -345,14 +352,15 @@ " 1980-01-01 00:00:00+00:00\n", " 1980-01-01 11:06:39+00:00\n", " 1.0\n", + " 40000\n", " [hx, hy]\n", " [ex, ey, hz]\n", " {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '...\n", " True\n", - " /home/kkappler/software/irismt/aurora/data/syn...\n", - " False\n", " 39999.0\n", + " C:\\Users\\jpeacock\\OneDrive - DOI\\Documents\\Git...\n", " False\n", + " None\n", " \n", " \n", " 1\n", @@ -362,35 +370,36 @@ " 1980-01-01 00:00:00+00:00\n", " 1980-01-01 11:06:39+00:00\n", " 1.0\n", + " 40000\n", " [hx, hy]\n", " [ex, ey, hz]\n", " {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '...\n", " True\n", - " /home/kkappler/software/irismt/aurora/data/syn...\n", - " True\n", " 39999.0\n", - " False\n", + " C:\\Users\\jpeacock\\OneDrive - DOI\\Documents\\Git...\n", + " True\n", + " None\n", " \n", " \n", "\n", "" ], "text/plain": [ - " survey station_id run_id start \\\n", - "0 none test1 001 1980-01-01 00:00:00+00:00 \n", - "1 none test2 001 1980-01-01 00:00:00+00:00 \n", + " survey station run start end \\\n", + "0 none test1 001 1980-01-01 00:00:00+00:00 1980-01-01 11:06:39+00:00 \n", + "1 none test2 001 1980-01-01 00:00:00+00:00 1980-01-01 11:06:39+00:00 \n", "\n", - " end sample_rate input_channels output_channels \\\n", - "0 1980-01-01 11:06:39+00:00 1.0 [hx, hy] [ex, ey, hz] \n", - "1 1980-01-01 11:06:39+00:00 1.0 [hx, hy] [ex, ey, hz] \n", + " sample_rate n_samples input_channels output_channels \\\n", + "0 1.0 40000 [hx, hy] [ex, ey, hz] \n", + "1 1.0 40000 [hx, hy] [ex, ey, hz] \n", "\n", - " channel_scale_factors valid \\\n", - "0 {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '... True \n", - "1 {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '... True \n", + " channel_scale_factors valid duration \\\n", + "0 {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '... True 39999.0 \n", + "1 {'ex': 1.0, 'ey': 1.0, 'hx': 1.0, 'hy': 1.0, '... True 39999.0 \n", "\n", - " mth5_path remote duration fc \n", - "0 /home/kkappler/software/irismt/aurora/data/syn... False 39999.0 False \n", - "1 /home/kkappler/software/irismt/aurora/data/syn... True 39999.0 False " + " mth5_path remote fc \n", + "0 C:\\Users\\jpeacock\\OneDrive - DOI\\Documents\\Git... False None \n", + "1 C:\\Users\\jpeacock\\OneDrive - DOI\\Documents\\Git... True None " ] }, "execution_count": 9, @@ -432,8 +441,8 @@ " \n", " \n", " survey\n", - " station_id\n", - " run_id\n", + " station\n", + " run\n", " start\n", " end\n", " duration\n", @@ -463,13 +472,13 @@ "" ], "text/plain": [ - " survey station_id run_id start \\\n", - "0 none test1 001 1980-01-01 00:00:00+00:00 \n", - "1 none test2 001 1980-01-01 00:00:00+00:00 \n", + " survey station run start end \\\n", + "0 none test1 001 1980-01-01 00:00:00+00:00 1980-01-01 11:06:39+00:00 \n", + "1 none test2 001 1980-01-01 00:00:00+00:00 1980-01-01 11:06:39+00:00 \n", "\n", - " end duration \n", - "0 1980-01-01 11:06:39+00:00 39999.0 \n", - "1 1980-01-01 11:06:39+00:00 39999.0 " + " duration \n", + "0 39999.0 \n", + "1 39999.0 " ] }, "execution_count": 10, @@ -499,7 +508,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "\u001b[1m2023-11-10T10:19:21.972054-0800 | INFO | aurora.config.config_creator | determine_band_specification_style | Bands not defined; setting to EMTF BANDS_DEFAULT_FILE\u001b[0m\n" + "\u001b[1m2024-08-02T16:15:49.561413-0700 | INFO | aurora.config.config_creator | determine_band_specification_style | Bands not defined; setting to EMTF BANDS_DEFAULT_FILE\u001b[0m\n" ] } ], @@ -520,7 +529,7 @@ "text/plain": [ "{\n", " \"processing\": {\n", - " \"band_setup_file\": \"/home/kkappler/software/irismt/aurora/aurora/config/emtf_band_setup/bs_test.cfg\",\n", + " \"band_setup_file\": \"C:\\\\Users\\\\jpeacock\\\\OneDrive - DOI\\\\Documents\\\\GitHub\\\\aurora\\\\aurora\\\\config\\\\emtf_band_setup\\\\bs_test.cfg\",\n", " \"band_specification_style\": \"EMTF\",\n", " \"channel_nomenclature.ex\": \"ex\",\n", " \"channel_nomenclature.ey\": \"ey\",\n", @@ -649,6 +658,9 @@ " \"regression.max_iterations\": 10,\n", " \"regression.max_redescending_iterations\": 2,\n", " \"regression.minimum_cycles\": 10,\n", + " \"regression.r0\": 1.4,\n", + " \"regression.tolerance\": 0.0005,\n", + " \"regression.u0\": 2.8,\n", " \"save_fcs\": false,\n", " \"window.clock_zero_type\": \"ignore\",\n", " \"window.num_samples\": 128,\n", @@ -755,6 +767,9 @@ " \"regression.max_iterations\": 10,\n", " \"regression.max_redescending_iterations\": 2,\n", " \"regression.minimum_cycles\": 10,\n", + " \"regression.r0\": 1.4,\n", + " \"regression.tolerance\": 0.0005,\n", + " \"regression.u0\": 2.8,\n", " \"save_fcs\": false,\n", " \"window.clock_zero_type\": \"ignore\",\n", " \"window.num_samples\": 128,\n", @@ -861,6 +876,9 @@ " \"regression.max_iterations\": 10,\n", " \"regression.max_redescending_iterations\": 2,\n", " \"regression.minimum_cycles\": 10,\n", + " \"regression.r0\": 1.4,\n", + " \"regression.tolerance\": 0.0005,\n", + " \"regression.u0\": 2.8,\n", " \"save_fcs\": false,\n", " \"window.clock_zero_type\": \"ignore\",\n", " \"window.num_samples\": 128,\n", @@ -956,6 +974,9 @@ " \"regression.max_iterations\": 10,\n", " \"regression.max_redescending_iterations\": 2,\n", " \"regression.minimum_cycles\": 10,\n", + " \"regression.r0\": 1.4,\n", + " \"regression.tolerance\": 0.0005,\n", + " \"regression.u0\": 2.8,\n", " \"save_fcs\": false,\n", " \"window.clock_zero_type\": \"ignore\",\n", " \"window.num_samples\": 128,\n", @@ -966,7 +987,7 @@ " ],\n", " \"id\": \"test1-test2\",\n", " \"stations.local.id\": \"test1\",\n", - " \"stations.local.mth5_path\": \"/home/kkappler/software/irismt/aurora/data/synthetic/mth5/test12rr.h5\",\n", + " \"stations.local.mth5_path\": \"C:\\\\Users\\\\jpeacock\\\\OneDrive - DOI\\\\Documents\\\\GitHub\\\\aurora\\\\data\\\\synthetic\\\\mth5\\\\test12rr.h5\",\n", " \"stations.local.remote\": false,\n", " \"stations.local.runs\": [\n", " {\n", @@ -1022,7 +1043,7 @@ " {\n", " \"station\": {\n", " \"id\": \"test2\",\n", - " \"mth5_path\": \"/home/kkappler/software/irismt/aurora/data/synthetic/mth5/test12rr.h5\",\n", + " \"mth5_path\": \"C:\\\\Users\\\\jpeacock\\\\OneDrive - DOI\\\\Documents\\\\GitHub\\\\aurora\\\\data\\\\synthetic\\\\mth5\\\\test12rr.h5\",\n", " \"remote\": true,\n", " 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