max-seq-len default value

[Dmitry-Antipov]

Is --max-seq-len default value reported with mmseqs2 -h correct?

For everywhere it is reported to be 65535, but it seems that in the source code (i.e. here

MMseqs2/src/workflow/Cluster.cpp

Line 58 in 7f5c000

if (p->PARAM_MAX_SEQ_LEN.wasSet == false) {

) it is set to 10000 and it actually matches with the mmseq align results I see - they are truncated on first 10000 bases

Expected Behavior

Current Behavior

Steps to Reproduce (for bugs)

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MMseqs Output (for bugs)

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Context

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Your Environment

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• Git commit used (The string after "MMseqs Version:" when you execute MMseqs without any parameters):
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• Server specifications (especially CPU support for AVX2/SSE and amount of system memory):
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