From 86e59523808ffcceabf88a49c1ae1e67f1d935ae Mon Sep 17 00:00:00 2001 From: Seth Stadick Date: Mon, 29 Jul 2024 09:31:48 -0600 Subject: [PATCH] chore: update changelog --- CHANGELOG.md | 4 + Cargo.lock | 695 ++++++++++++++++++++++++++++++--------------------- 2 files changed, 411 insertions(+), 288 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index b26eed6..20c0658 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -45,3 +45,7 @@ - Changed log level of "Batch Processing ...", "Processing ...", and "Processing region" logging statements to `trace`. Set `RUST_LOG=trace` environment variable to restore previous logging verbosity. - Added "Processing TID ..." log statement at `info` level (on by default). - All `perbase` commands now gracefully handle broken pipes and exit 0. + +## 0.10.0 + +- [fix](https://github.com/sstadick/perbase/pull/73) from @biermanr for [71](https://github.com/sstadick/perbase/issues/71) (--keep-zeros skip/dup loci) diff --git a/Cargo.lock b/Cargo.lock index 8c720de..da9472a 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -10,9 +10,9 @@ checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe" [[package]] name = "aho-corasick" -version = "0.7.18" +version = "1.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1e37cfd5e7657ada45f742d6e99ca5788580b5c529dc78faf11ece6dc702656f" +checksum = "b2969dcb958b36655471fc61f7e416fa76033bdd4bfed0678d8fee1e2d07a1f0" dependencies = [ "memchr", ] @@ -28,9 +28,9 @@ dependencies = [ [[package]] name = "anyhow" -version = "1.0.57" +version = "1.0.75" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "08f9b8508dccb7687a1d6c4ce66b2b0ecef467c94667de27d8d7fe1f8d2a9cdc" +checksum = "a4668cab20f66d8d020e1fbc0ebe47217433c1b6c8f2040faf858554e394ace6" [[package]] name = "approx" @@ -47,7 +47,7 @@ version = "0.2.14" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d9b39be18770d11421cdb1b9947a45dd3f37e93092cbf377614828a319d5fee8" dependencies = [ - "hermit-abi", + "hermit-abi 0.1.19", "libc", "winapi 0.3.9", ] @@ -91,7 +91,7 @@ dependencies = [ "serde_derive", "statrs", "strum", - "strum_macros", + "strum_macros 0.23.1", "thiserror", "triple_accel", "vec_map", @@ -99,22 +99,22 @@ dependencies = [ [[package]] name = "bio-types" -version = "0.12.1" +version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "13bc4296477f37f54e4fd21efaf48a7fa40fbb289bfbf338af5fbbe42797acb6" +checksum = "9d45749b87f21808051025e9bf714d14ff4627f9d8ca967eade6946ea769aa4a" dependencies = [ "derive-new", "lazy_static", "regex", - "strum_macros", + "strum_macros 0.25.2", "thiserror", ] [[package]] name = "bit-set" -version = "0.5.2" +version = "0.5.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6e11e16035ea35e4e5997b393eacbf6f63983188f7a2ad25bfb13465f5ad59de" +checksum = "0700ddab506f33b20a03b13996eccd309a48e5ff77d0d95926aa0210fb4e95f1" dependencies = [ "bit-vec", ] @@ -131,13 +131,18 @@ version = "1.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a" +[[package]] +name = "bitflags" +version = "2.4.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b4682ae6287fcf752ecaabbfcc7b6f9b72aa33933dc23a554d853aea8eea8635" + [[package]] name = "bstr" -version = "0.2.17" +version = "1.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ba3569f383e8f1598449f1a423e72e99569137b47740b1da11ef19af3d5c3223" +checksum = "c79ad7fb2dd38f3dabd76b09c6a5a20c038fc0213ef1e9afd30eb777f120f019" dependencies = [ - "lazy_static", "memchr", "regex-automata", "serde", @@ -145,9 +150,9 @@ dependencies = [ [[package]] name = "bumpalo" -version = "3.10.0" +version = "3.14.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "37ccbd214614c6783386c1af30caf03192f17891059cecc394b4fb119e363de3" +checksum = "7f30e7476521f6f8af1a1c4c0b8cc94f0bee37d91763d0ca2665f299b6cd8aec" [[package]] name = "bv" @@ -161,21 +166,21 @@ dependencies = [ [[package]] name = "bytecount" -version = "0.6.3" +version = "0.6.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2c676a478f63e9fa2dd5368a42f28bba0d6c560b775f38583c8bbaa7fcd67c9c" +checksum = "ad152d03a2c813c80bb94fedbf3a3f02b28f793e39e7c214c8a0bcc196343de7" [[package]] name = "byteorder" -version = "1.4.3" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "14c189c53d098945499cdfa7ecc63567cf3886b3332b312a5b4585d8d3a6a610" +checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b" [[package]] name = "bytes" -version = "1.1.0" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c4872d67bab6358e59559027aa3b9157c53d9358c51423c17554809a8858e0f8" +checksum = "a2bd12c1caf447e69cd4528f47f94d203fd2582878ecb9e9465484c4148a8223" [[package]] name = "bzip2-sys" @@ -190,11 +195,12 @@ dependencies = [ [[package]] name = "cc" -version = "1.0.73" +version = "1.0.83" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2fff2a6927b3bb87f9595d67196a70493f627687a71d87a0d692242c33f58c11" +checksum = "f1174fb0b6ec23863f8b971027804a42614e347eafb0a95bf0b12cdae21fc4d0" dependencies = [ "jobserver", + "libc", ] [[package]] @@ -211,7 +217,7 @@ checksum = "a0610544180c38b88101fecf2dd634b174a62eef6946f84dfc6a7127512b381c" dependencies = [ "ansi_term", "atty", - "bitflags", + "bitflags 1.3.2", "strsim", "textwrap", "unicode-width", @@ -220,9 +226,9 @@ dependencies = [ [[package]] name = "cmake" -version = "0.1.48" +version = "0.1.50" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e8ad8cef104ac57b68b89df3208164d228503abbdce70f6880ffa3d970e7443a" +checksum = "a31c789563b815f77f4250caee12365734369f942439b7defd71e18a48197130" dependencies = [ "cc", ] @@ -250,9 +256,9 @@ dependencies = [ [[package]] name = "crossbeam" -version = "0.8.1" +version = "0.8.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ae5588f6b3c3cb05239e90bd110f257254aecd01e4635400391aeae07497845" +checksum = "2801af0d36612ae591caa9568261fddce32ce6e08a7275ea334a06a4ad021a2c" dependencies = [ "cfg-if", "crossbeam-channel", @@ -264,9 +270,9 @@ dependencies = [ [[package]] name = "crossbeam-channel" -version = "0.5.4" +version = "0.5.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5aaa7bd5fb665c6864b5f963dd9097905c54125909c7aa94c9e18507cdbe6c53" +checksum = "a33c2bf77f2df06183c3aa30d1e96c0695a313d4f9c453cc3762a6db39f99200" dependencies = [ "cfg-if", "crossbeam-utils", @@ -274,9 +280,9 @@ dependencies = [ [[package]] name = "crossbeam-deque" -version = "0.8.1" +version = "0.8.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6455c0ca19f0d2fbf751b908d5c55c1f5cbc65e03c4225427254b46890bdde1e" +checksum = "ce6fd6f855243022dcecf8702fef0c297d4338e226845fe067f6341ad9fa0cef" dependencies = [ "cfg-if", "crossbeam-epoch", @@ -285,23 +291,22 @@ dependencies = [ [[package]] name = "crossbeam-epoch" -version = "0.9.8" +version = "0.9.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1145cf131a2c6ba0615079ab6a638f7e1973ac9c2634fcbeaaad6114246efe8c" +checksum = "ae211234986c545741a7dc064309f67ee1e5ad243d0e48335adc0484d960bcc7" dependencies = [ "autocfg", "cfg-if", "crossbeam-utils", - "lazy_static", "memoffset", "scopeguard", ] [[package]] name = "crossbeam-queue" -version = "0.3.5" +version = "0.3.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1f25d8400f4a7a5778f0e4e52384a48cbd9b5c495d110786187fc750075277a2" +checksum = "d1cfb3ea8a53f37c40dea2c7bedcbd88bdfae54f5e2175d6ecaff1c988353add" dependencies = [ "cfg-if", "crossbeam-utils", @@ -309,21 +314,19 @@ dependencies = [ [[package]] name = "crossbeam-utils" -version = "0.8.8" +version = "0.8.16" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0bf124c720b7686e3c2663cf54062ab0f68a88af2fb6a030e87e30bf721fcb38" +checksum = "5a22b2d63d4d1dc0b7f1b6b2747dd0088008a9be28b6ddf0b1e7d335e3037294" dependencies = [ "cfg-if", - "lazy_static", ] [[package]] name = "csv" -version = "1.1.6" +version = "1.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "22813a6dc45b335f9bade10bf7271dc477e81113e89eb251a0bc2a8a81c536e1" +checksum = "ac574ff4d437a7b5ad237ef331c17ccca63c46479e5b5453eb8e10bb99a759fe" dependencies = [ - "bstr", "csv-core", "itoa", "ryu", @@ -332,18 +335,18 @@ dependencies = [ [[package]] name = "csv-core" -version = "0.1.10" +version = "0.1.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2b2466559f260f48ad25fe6317b3c8dac77b5bdb5763ac7d9d6103530663bc90" +checksum = "5efa2b3d7902f4b634a20cae3c9c4e6209dc4779feb6863329607560143efa70" dependencies = [ "memchr", ] [[package]] name = "curl-sys" -version = "0.4.55+curl-7.83.1" +version = "0.4.67+curl-8.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "23734ec77368ec583c2e61dd3f0b0e5c98b93abe6d2a004ca06b91dd7e3e2762" +checksum = "3cc35d066510b197a0f72de863736641539957628c8a42e70e27c66849e77c34" dependencies = [ "cc", "libc", @@ -351,7 +354,7 @@ dependencies = [ "openssl-sys", "pkg-config", "vcpkg", - "winapi 0.3.9", + "windows-sys", ] [[package]] @@ -368,14 +371,14 @@ checksum = "3418329ca0ad70234b9735dc4ceed10af4df60eff9c8e7b06cb5e520d92c3535" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] name = "either" -version = "1.6.1" +version = "1.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e78d4f1cc4ae33bbfc157ed5d5a5ef3bc29227303d595861deb238fcec4e9457" +checksum = "a26ae43d7bcc3b814de94796a5e736d4029efb0ee900c12e2d54c993ad1a1e07" [[package]] name = "enum-map" @@ -394,14 +397,14 @@ checksum = "84278eae0af6e34ff6c1db44c11634a694aafac559ff3080e4db4e4ac35907aa" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] name = "env_logger" -version = "0.9.0" +version = "0.9.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0b2cf0344971ee6c64c31be0d530793fba457d322dfec2810c453d0ef228f9c3" +checksum = "a12e6657c4c97ebab115a42dcee77225f7f482cdd841cf7088c657a42e9e00e7" dependencies = [ "atty", "humantime", @@ -411,14 +414,27 @@ dependencies = [ ] [[package]] -name = "fastrand" -version = "1.7.0" +name = "equivalent" +version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c3fcf0cee53519c866c09b5de1f6c56ff9d647101f81c1964fa632e148896cdf" +checksum = "5443807d6dff69373d433ab9ef5378ad8df50ca6298caf15de6e52e24aaf54d5" + +[[package]] +name = "errno" +version = "0.3.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ac3e13f66a2f95e32a39eaa81f6b95d42878ca0e1db0c7543723dfe12557e860" dependencies = [ - "instant", + "libc", + "windows-sys", ] +[[package]] +name = "fastrand" +version = "2.0.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "25cbce373ec4653f1a01a31e8a5e5ec0c622dc27ff9c4e6606eefef5cbbed4a5" + [[package]] name = "feature-probe" version = "0.1.1" @@ -427,15 +443,15 @@ checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da" [[package]] name = "fixedbitset" -version = "0.4.1" +version = "0.4.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "279fb028e20b3c4c320317955b77c5e0c9701f05a1d309905d6fc702cdc5053e" +checksum = "0ce7134b9999ecaf8bcd65542e436736ef32ddca1b3e06094cb6ec5755203b80" [[package]] name = "flate2" -version = "1.0.24" +version = "1.0.27" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f82b0f4c27ad9f8bfd1f3208d882da2b09c301bc1c828fd3a00d0216d2fbbff6" +checksum = "c6c98ee8095e9d1dcbf2fcc6d95acccb90d1c81db1e44725c6a984b1dbdfb010" dependencies = [ "crc32fast", "libz-sys", @@ -444,9 +460,9 @@ dependencies = [ [[package]] name = "flume" -version = "0.10.12" +version = "0.10.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "843c03199d0c0ca54bc1ea90ac0d507274c28abcc4f691ae8b4eaa375087c76a" +checksum = "1657b4441c3403d9f7b3409e47575237dac27b1b5726df654a6ecbf92f0f7577" dependencies = [ "futures-core", "futures-sink", @@ -463,11 +479,10 @@ checksum = "3f9eec918d3f24069decb9af1554cad7c880e2da24a9afd88aca000531ab82c1" [[package]] name = "form_urlencoded" -version = "1.0.1" +version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5fc25a87fa4fd2094bffb06925852034d90a17f0d1e05197d4956d3555752191" +checksum = "a62bc1cf6f830c2ec14a513a9fb124d0a213a629668a4186f329db21fe045652" dependencies = [ - "matches", "percent-encoding", ] @@ -477,20 +492,20 @@ version = "1.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6fc7a9dc005c944c98a935e7fd626faf5bf7e5a609f94bc13e42fc4a02e52593" dependencies = [ - "quick-error 1.2.3", + "quick-error", ] [[package]] name = "futures-core" -version = "0.3.21" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0c09fd04b7e4073ac7156a9539b57a484a8ea920f79c7c675d05d289ab6110d3" +checksum = "4bca583b7e26f571124fe5b7561d49cb2868d79116cfa0eefce955557c6fee8c" [[package]] name = "futures-sink" -version = "0.3.21" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "21163e139fa306126e6eedaf49ecdb4588f939600f0b1e770f4205ee4b7fa868" +checksum = "f43be4fe21a13b9781a69afa4985b0f6ee0e1afab2c6f454a8cf30e2b2237b6e" [[package]] name = "fxhash" @@ -503,9 +518,9 @@ dependencies = [ [[package]] name = "getrandom" -version = "0.2.6" +version = "0.2.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9be70c98951c83b8d2f8f60d7065fa6d5146873094452a1008da8c2f1e4205ad" +checksum = "be4136b2a15dd319360be1c07d9933517ccf0be8f16bf62a3bee4f0d618df427" dependencies = [ "cfg-if", "js-sys", @@ -523,20 +538,20 @@ dependencies = [ "proc-macro-error", "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] name = "glob" -version = "0.3.0" +version = "0.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9b919933a397b79c37e33b77bb2aa3dc8eb6e165ad809e58ff75bc7db2e34574" +checksum = "d2fabcfbdc87f4758337ca535fb41a6d701b65693ce38287d856d1674551ec9b" [[package]] name = "globset" -version = "0.4.8" +version = "0.4.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "10463d9ff00a2a068db14231982f5132edebad0d7660cd956a1c30292dbcbfbd" +checksum = "759c97c1e17c55525b57192c06a267cda0ac5210b222d6b82189a2338fa1c13d" dependencies = [ "aho-corasick", "bstr", @@ -547,11 +562,10 @@ dependencies = [ [[package]] name = "grep-cli" -version = "0.1.6" +version = "0.1.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2dd110c34bb4460d0de5062413b773e385cbf8a85a63fc535590110a09e79e8a" +checksum = "8fe4bdbf4300c8b039f5d7eec7fbc6760d2c85bb15ac7499c4d235667f6d747a" dependencies = [ - "atty", "bstr", "globset", "lazy_static", @@ -564,9 +578,9 @@ dependencies = [ [[package]] name = "gzp" -version = "0.10.0" +version = "0.10.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ccc7e0b056a16cccd808dbd3ee2af98fc527bf5d18d9536511e70f432727075a" +checksum = "bcaa63633f99fe42694dbc0004cdc2ba160d9a303f0d08d2e50380a500a19cf3" dependencies = [ "byteorder", "bytes", @@ -581,9 +595,9 @@ dependencies = [ [[package]] name = "hashbrown" -version = "0.11.2" +version = "0.14.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ab5ef0d4909ef3724cc8cce6ccc8572c5c817592e9285f5464f8e86f8bd3726e" +checksum = "7dfda62a12f55daeae5015f81b0baea145391cb4520f86c248fc615d72640d12" [[package]] name = "heck" @@ -594,6 +608,12 @@ dependencies = [ "unicode-segmentation", ] +[[package]] +name = "heck" +version = "0.4.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" + [[package]] name = "hermit-abi" version = "0.1.19" @@ -603,11 +623,17 @@ dependencies = [ "libc", ] +[[package]] +name = "hermit-abi" +version = "0.3.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d77f7ec81a6d05a3abb01ab6eb7590f6083d08449fe5a1c8b1e620283546ccb7" + [[package]] name = "hts-sys" -version = "2.0.2" +version = "2.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "72c443906f4bac8b8cfe67e4e9d9ca83a454b70a092e1764133d19d5c5c7c1e2" +checksum = "deebfb779c734d542e7f14c298597914b9b5425e4089aef482eacb5cab941915" dependencies = [ "bzip2-sys", "cc", @@ -627,11 +653,10 @@ checksum = "9a3a5bfb195931eeb336b2a7b4d761daec841b97f947d34394601737a7bba5e4" [[package]] name = "idna" -version = "0.2.3" +version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "418a0a6fab821475f634efe3ccc45c013f742efe03d853e8d3355d5cb850ecf8" +checksum = "7d20d6b07bfbc108882d88ed8e37d39636dcc260e15e30c45e6ba089610b917c" dependencies = [ - "matches", "unicode-bidi", "unicode-normalization", ] @@ -644,28 +669,19 @@ checksum = "9007da9cacbd3e6343da136e98b0d2df013f553d35bdec8b518f07bea768e19c" [[package]] name = "indexmap" -version = "1.8.2" +version = "2.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e6012d540c5baa3589337a98ce73408de9b5a25ec9fc2c6fd6be8f0d39e0ca5a" +checksum = "8adf3ddd720272c6ea8bf59463c04e0f93d0bbf7c5439b691bca2987e0270897" dependencies = [ - "autocfg", + "equivalent", "hashbrown", ] -[[package]] -name = "instant" -version = "0.1.12" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7a5bbe824c507c5da5956355e86a746d82e0e1464f65d862cc5e71da70e94b2c" -dependencies = [ - "cfg-if", -] - [[package]] name = "itertools" -version = "0.10.3" +version = "0.10.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a9a9d19fa1e79b6215ff29b9d6880b706147f16e9b1dbb1e4e5947b5b02bc5e3" +checksum = "b0fd2260e829bddf4cb6ea802289de2f86d6a7a690192fbe91b3f46e0f2c8473" dependencies = [ "either", ] @@ -681,24 +697,24 @@ dependencies = [ [[package]] name = "itoa" -version = "0.4.8" +version = "1.0.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b71991ff56294aa922b450139ee08b3bfc70982c6b2c7562771375cf73542dd4" +checksum = "af150ab688ff2122fcef229be89cb50dd66af9e01a4ff320cc137eecc9bacc38" [[package]] name = "jobserver" -version = "0.1.24" +version = "0.1.27" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "af25a77299a7f711a01975c35a6a424eb6862092cc2d6c72c4ed6cbc56dfc1fa" +checksum = "8c37f63953c4c63420ed5fd3d6d398c719489b9f872b9fa683262f8edd363c7d" dependencies = [ "libc", ] [[package]] name = "js-sys" -version = "0.3.57" +version = "0.3.64" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "671a26f820db17c2a2750743f1dd03bafd15b98c9f30c7c2628c024c05d73397" +checksum = "c5f195fe497f702db0f318b07fdd68edb16955aed830df8363d837542f8f935a" dependencies = [ "wasm-bindgen", ] @@ -721,9 +737,9 @@ checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" [[package]] name = "libc" -version = "0.2.126" +version = "0.2.149" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "349d5a591cd28b49e1d1037471617a32ddcda5731b99419008085f72d5a53836" +checksum = "a08173bc88b7955d1b3145aa561539096c421ac8debde8cbc3612ec635fee29b" [[package]] name = "libdeflate-sys" @@ -745,15 +761,15 @@ dependencies = [ [[package]] name = "libm" -version = "0.2.2" +version = "0.2.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "33a33a362ce288760ec6a508b94caaec573ae7d3bbbd91b87aa0bad4456839db" +checksum = "4ec2a862134d2a7d32d7983ddcdd1c4923530833c9f2ea1a44fc5fa473989058" [[package]] name = "libz-sys" -version = "1.1.8" +version = "1.1.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9702761c3935f8cc2f101793272e202c72b99da8f4224a19ddcf1279a6450bbf" +checksum = "d97137b25e321a73eef1418d1d5d2eda4d77e12813f8e6dead84bc52c5870a7b" dependencies = [ "cc", "cmake", @@ -768,11 +784,17 @@ version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bfae20f6b19ad527b550c223fddc3077a547fc70cda94b9b566575423fd303ee" +[[package]] +name = "linux-raw-sys" +version = "0.4.10" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "da2479e8c062e40bf0066ffa0bc823de0a9368974af99c9f6df941d2c231e03f" + [[package]] name = "lock_api" -version = "0.4.7" +version = "0.4.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "327fa5b6a6940e4699ec49a9beae1ea4845c6bab9314e4f84ac68742139d8c53" +checksum = "c1cc9717a20b1bb222f333e6a92fd32f7d8a18ddc5a3191a11af45dcbf4dcd16" dependencies = [ "autocfg", "scopeguard", @@ -780,12 +802,9 @@ dependencies = [ [[package]] name = "log" -version = "0.4.17" +version = "0.4.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "abb12e687cfb44aa40f41fc3978ef76448f9b6038cad6aef4259d3c095a2382e" -dependencies = [ - "cfg-if", -] +checksum = "b5e6163cb8c49088c2c36f57875e58ccd8c87c7427f7fbd50ea6710b2f3f2e8f" [[package]] name = "lru_time_cache" @@ -795,50 +814,45 @@ checksum = "9106e1d747ffd48e6be5bb2d97fa706ed25b144fbee4d5c02eae110cd8d6badd" [[package]] name = "lzma-sys" -version = "0.1.19" +version = "0.1.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e06754c4acf47d49c727d5665ca9fb828851cda315ed3bd51edd148ef78a8772" +checksum = "5fda04ab3764e6cde78b9974eec4f779acaba7c4e84b36eca3cf77c581b85d27" dependencies = [ "cc", "libc", "pkg-config", ] -[[package]] -name = "matches" -version = "0.1.9" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a3e378b66a060d48947b590737b30a1be76706c8dd7b8ba0f2fe3989c68a853f" - [[package]] name = "matrixmultiply" -version = "0.3.2" +version = "0.3.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "add85d4dd35074e6fedc608f8c8f513a3548619a9024b751949ef0e8e45a4d84" +checksum = "7574c1cf36da4798ab73da5b215bbf444f50718207754cb522201d78d1cd0ff2" dependencies = [ + "autocfg", "rawpointer", ] [[package]] name = "memchr" -version = "2.5.0" +version = "2.6.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2dffe52ecf27772e601905b7522cb4ef790d2cc203488bbd0e2fe85fcb74566d" +checksum = "f665ee40bc4a3c5590afb1e9677db74a508659dfd71e126420da8274909a0167" [[package]] name = "memoffset" -version = "0.6.5" +version = "0.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5aa361d4faea93603064a027415f07bd8e1d5c88c9fbf68bf56a285428fd79ce" +checksum = "5a634b1c61a95585bd15607c6ab0c4e5b226e695ff2800ba0cdccddf208c406c" dependencies = [ "autocfg", ] [[package]] name = "miniz_oxide" -version = "0.5.3" +version = "0.7.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6f5c75688da582b8ffc1f1799e9db273f32133c49e048f614d22ec3256773ccc" +checksum = "e7810e0be55b428ada41041c41f32c9f1a42817901b4ccf45fa3d4b6561e74c7" dependencies = [ "adler", ] @@ -878,7 +892,7 @@ checksum = "01fcc0b8149b4632adc89ac3b7b31a12fb6099a0317a4eb2ebff574ef7de7218" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -892,9 +906,9 @@ dependencies = [ [[package]] name = "ndarray" -version = "0.15.4" +version = "0.15.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dec23e6762830658d2b3d385a75aa212af2f67a4586d4442907144f3bb6a1ca8" +checksum = "adb12d4e967ec485a5f71c6311fe28158e9d6f4bc4a447b474184d0f91a8fa32" dependencies = [ "matrixmultiply", "num-complex", @@ -914,9 +928,9 @@ dependencies = [ [[package]] name = "num-complex" -version = "0.4.1" +version = "0.4.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "97fbc387afefefd5e9e39493299f3069e14a140dd34dc19b4c1c1a8fddb6a790" +checksum = "1ba157ca0885411de85d6ca030ba7e2a83a28636056c7c699b07c8b6f7383214" dependencies = [ "num-traits", ] @@ -933,9 +947,9 @@ dependencies = [ [[package]] name = "num-rational" -version = "0.4.0" +version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d41702bd167c2df5520b384281bc111a4b5efcf7fbc4c9c222c815b07e0a6a6a" +checksum = "0638a1c9d0a3c0914158145bc76cff373a75a627e6ecbfb71cbe6f453a5a19b0" dependencies = [ "autocfg", "num-integer", @@ -944,9 +958,9 @@ dependencies = [ [[package]] name = "num-traits" -version = "0.2.15" +version = "0.2.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "578ede34cf02f8924ab9447f50c28075b4d3e5b269972345e7e0372b38c6cdcd" +checksum = "39e3200413f237f41ab11ad6d161bc7239c84dcb631773ccd7de3dfe4b5c267c" dependencies = [ "autocfg", "libm", @@ -954,30 +968,35 @@ dependencies = [ [[package]] name = "num_cpus" -version = "1.13.1" +version = "1.16.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "19e64526ebdee182341572e50e9ad03965aa510cd94427a4549448f285e957a1" +checksum = "4161fcb6d602d4d2081af7c3a45852d875a03dd337a6bfdd6e06407b61342a43" dependencies = [ - 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"syn", + "syn 2.0.38", ] [[package]] name = "pkg-config" -version = "0.3.25" +version = "0.3.27" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1df8c4ec4b0627e53bdf214615ad287367e482558cf84b109250b37464dc03ae" +checksum = "26072860ba924cbfa98ea39c8c19b4dd6a4a25423dbdf219c1eca91aa0cf6964" [[package]] name = "ppv-lite86" -version = "0.2.16" +version = "0.2.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eb9f9e6e233e5c4a35559a617bf40a4ec447db2e84c20b55a6f83167b7e57872" +checksum = "5b40af805b3121feab8a3c29f04d8ad262fa8e0561883e7653e024ae4479e6de" [[package]] name = "proc-macro-error" @@ -1086,7 +1105,7 @@ dependencies = [ "proc-macro-error-attr", "proc-macro2", "quote", - "syn", + "syn 1.0.109", "version_check", ] @@ -1103,31 +1122,31 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.39" +version = "1.0.69" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c54b25569025b7fc9651de43004ae593a75ad88543b17178aa5e1b9c4f15f56f" +checksum = "134c189feb4956b20f6f547d2cf727d4c0fe06722b20a0eec87ed445a97f92da" dependencies = [ "unicode-ident", ] [[package]] name = "proptest" -version = "1.0.0" +version = "1.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1e0d9cc07f18492d879586c92b485def06bc850da3118075cd45d50e9c95b0e5" +checksum = "7c003ac8c77cb07bb74f5f198bce836a689bcd5a42574612bf14d17bfd08c20e" dependencies = [ "bit-set", - 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