Taxonkit support release

[esteinig]

Hey @jaebeom-kim,

really enjoying Metabuli, fantastic work!

I am routinely building grafted / adjusted taxonomies with taxonkit and was wondering if the changes in the fork below could be pulled into the next release / Bioconda release, so we can test using Metabuli in production?

FYI the fix works for other taxonkit adjusted taxonomies like the NCBI/GTDB grafts outlined in the Tutorials.

Currently, I am using this version of Metabuli: Metabuli Version 1.0.8. I have a question: is the version I downloaded different from the one available in this directory? -> https://github.com/jaebeom-kim/Metabuli

Yes, please use https://github.com/jaebeom-kim/Metabuli when you try the ICTV database. Sorry for this inconvenience. Taxonkit uses the full range of 32 bit integer for taxonomy ID, but Metabuli used only 31 bits, so I made a quick fix in my fork.

Another question: Should I download the nodes.dmp and names.dmp files from here > https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/new_taxdump/ or do I need to build my own taxonomy files using TaxonKit and create an ICTV taxdump file?

You don't need to download any dmp files to try the ICTV database.
But, I just shared dmp files in https://hulk.mmseqs.com/jaebeom/vmr39.2/ictv-taxdump/ just in case.

Thanks again!

Originally posted by @jaebeom-kim in #96 (comment)