From 1bb9f02fe7fe847bacafacf58f71ab98ba445cbd Mon Sep 17 00:00:00 2001 From: Stephen Turner Date: Wed, 7 Aug 2024 07:27:10 -0400 Subject: [PATCH] citation file --- .Rbuildignore | 1 + CITATION.cff | 191 ++++++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 192 insertions(+) create mode 100644 CITATION.cff diff --git a/.Rbuildignore b/.Rbuildignore index a1c41ba..641ff83 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -10,3 +10,4 @@ biorecap-report-.*\.html ^docs$ ^pkgdown$ ^\.github$ +^CITATION\.cff$ diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 0000000..95ae7bb --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,191 @@ +# -------------------------------------------- +# CITATION file created with {cffr} R package +# See also: https://docs.ropensci.org/cffr/ +# -------------------------------------------- + +cff-version: 1.2.0 +message: 'To cite package "biorecap" in publications use:' +type: software +license: MIT +title: 'biorecap: Retrieve and summarize bioRxiv preprints with a local LLM using + ollama' +version: 0.1.0 +abstract: Retrieve and summarize bioRxiv preprints with a local LLM using ollama. +authors: +- family-names: Turner + given-names: Stephen + email: vustephen@gmail.com + orcid: https://orcid.org/0000-0001-9140-9028 +repository-code: https://github.com/stephenturner/biorecap +url: https://stephenturner.github.io/biorecap/ +contact: +- family-names: Turner + given-names: Stephen + email: vustephen@gmail.com + orcid: https://orcid.org/0000-0001-9140-9028 +references: +- type: software + title: 'R: A Language and Environment for Statistical Computing' + notes: Depends + url: https://www.R-project.org/ + authors: + - name: R Core Team + institution: + name: R Foundation for Statistical Computing + address: Vienna, Austria + year: '2024' + version: '>= 4.2.0' +- type: software + title: dplyr + abstract: 'dplyr: A Grammar of Data Manipulation' + notes: Imports + url: https://dplyr.tidyverse.org + repository: https://CRAN.R-project.org/package=dplyr + authors: + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + orcid: https://orcid.org/0000-0003-4757-117X + - family-names: François + given-names: Romain + orcid: https://orcid.org/0000-0002-2444-4226 + - family-names: Henry + given-names: Lionel + - family-names: Müller + given-names: Kirill + orcid: https://orcid.org/0000-0002-1416-3412 + - family-names: Vaughan + given-names: Davis + email: davis@posit.co + orcid: https://orcid.org/0000-0003-4777-038X + year: '2024' + doi: 10.32614/CRAN.package.dplyr +- type: software + title: ollamar + abstract: 'ollamar: ''Ollama'' Language Models' + notes: Imports + url: https://hauselin.github.io/ollama-r/ + repository: https://CRAN.R-project.org/package=ollamar + authors: + - family-names: Lin + given-names: Hause + email: hauselin@gmail.com + orcid: https://orcid.org/0000-0003-4590-7039 + year: '2024' + doi: 10.32614/CRAN.package.ollamar +- type: software + title: rlang + abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features' + notes: Imports + url: https://rlang.r-lib.org + repository: https://CRAN.R-project.org/package=rlang + authors: + - family-names: Henry + given-names: Lionel + email: lionel@posit.co + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + year: '2024' + doi: 10.32614/CRAN.package.rlang +- type: software + title: rmarkdown + abstract: 'rmarkdown: Dynamic Documents for R' + notes: Imports + url: https://pkgs.rstudio.com/rmarkdown/ + repository: https://CRAN.R-project.org/package=rmarkdown + authors: + - family-names: Allaire + given-names: JJ + email: jj@posit.co + - family-names: Xie + given-names: Yihui + email: xie@yihui.name + orcid: https://orcid.org/0000-0003-0645-5666 + - family-names: Dervieux + given-names: Christophe + email: cderv@posit.co + orcid: https://orcid.org/0000-0003-4474-2498 + - family-names: McPherson + given-names: Jonathan + email: jonathan@posit.co + - family-names: Luraschi + given-names: Javier + - family-names: Ushey + given-names: Kevin + email: kevin@posit.co + - family-names: Atkins + given-names: Aron + email: aron@posit.co + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + - family-names: Cheng + given-names: Joe + email: joe@posit.co + - family-names: Chang + given-names: Winston + email: winston@posit.co + - family-names: Iannone + given-names: Richard + email: rich@posit.co + orcid: https://orcid.org/0000-0003-3925-190X + year: '2024' + doi: 10.32614/CRAN.package.rmarkdown +- type: software + title: tidyRSS + abstract: 'tidyRSS: Tidy RSS for R' + notes: Imports + url: https://github.com/RobertMyles/tidyrss + repository: https://CRAN.R-project.org/package=tidyRSS + authors: + - family-names: McDonnell + given-names: Robert Myles + email: robertmylesmcdonnell@gmail.com + year: '2024' + doi: 10.32614/CRAN.package.tidyRSS +- type: software + title: tinytable + abstract: 'tinytable: Simple and Configurable Tables in ''HTML'', ''LaTeX'', ''Markdown'', + ''Word'', ''PNG'', ''PDF'', and ''Typst'' Formats' + notes: Imports + url: https://vincentarelbundock.github.io/tinytable/ + repository: https://CRAN.R-project.org/package=tinytable + authors: + - family-names: Arel-Bundock + given-names: Vincent + email: vincent.arel-bundock@umontreal.ca + orcid: https://orcid.org/0000-0003-2042-7063 + year: '2024' + doi: 10.32614/CRAN.package.tinytable +- type: software + title: knitr + abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R' + notes: Suggests + url: https://yihui.org/knitr/ + repository: https://CRAN.R-project.org/package=knitr + authors: + - family-names: Xie + given-names: Yihui + email: xie@yihui.name + orcid: https://orcid.org/0000-0003-0645-5666 + year: '2024' + doi: 10.32614/CRAN.package.knitr +- type: software + title: markdown + abstract: 'markdown: Render Markdown with ''commonmark''' + notes: Suggests + url: https://github.com/rstudio/markdown + repository: https://CRAN.R-project.org/package=markdown + authors: + - family-names: Xie + given-names: Yihui + email: xie@yihui.name + orcid: https://orcid.org/0000-0003-0645-5666 + - family-names: Allaire + given-names: JJ + - family-names: Horner + given-names: Jeffrey + year: '2024' + doi: 10.32614/CRAN.package.markdown +