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modules.json
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{
"name": "nf-core/rnaseq",
"homePage": "https://github.com/nf-core/rnaseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bbmap/bbsplit": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"custom/getchromsizes": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"],
"patch": "modules/nf-core/custom/getchromsizes/custom-getchromsizes.diff"
},
"fastqc": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["fastq_fastqc_umitools_trimgalore"]
},
"fq/subsample": {
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"git_sha": "ad462aa294faf9a8c42688a08daf81a580594f70",
"installed_by": ["modules", "fastq_subsample_fq_salmon"]
},
"gffread": {
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},
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},
"hisat2/align": {
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"installed_by": ["fastq_align_hisat2"]
},
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},
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},
"preseq/lcextrap": {
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},
"qualimap/rnaseq": {
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},
"rsem/calculateexpression": {
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"rseqc/bamstat": {
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"rseqc/readdistribution": {
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"salmon/index": {
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"trimgalore": {
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}
}
},
"subworkflows": {
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}
}
}