DESCRIPTION

Package: SplitClusterTest
Type: Package
Title: FDR Control via Data Splitting for Testing-after-Clustering
Version: 0.1.0
Authors@R: c(
    person("Lijun", "Wang", email = "lijun.wang@yale.edu", role = c("aut", "cre")),
    person("Yingxin", "Lin", email = "yingxin.lin@yale.edu", role = c("aut")))
Description: FDR Control via Data Splitting for Testing-after-Clustering
    Particularly, in single-cell community, testing-after-clustering aims to identify differentially expressed (DE) genes across
    different cell types (or along pseudotime). However, the naive testing-after-clustering will inflate the false positives, which 
    is also referred as the double-dipping issue.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
URL: https://github.com/szcf-weiya/SplitClusterTest
BugReports: https://github.com/szcf-weiya/SplitClusterTest/issues
Suggests: 
    testthat (>= 3.0.0),
    pbmcapply,
    knitr,
    rmarkdown
Config/testthat/edition: 3
Depends: 
    R (>= 2.10)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: 
    Seurat,
    SingleCellExperiment,
    future,
    pbapply,
    future.apply,
    MASS,
    Matrix
Remotes: satijalab/Seurat@v4.4.0, Matrix@1.6-5
VignetteBuilder: knitr