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pip install git+https://github.com/tbenst/glia.git should work
pip install git+https://github.com/tbenst/glia.git
--------------------------------------------------------------------------- FileNotFoundError Traceback (most recent call last) o:\users\tyler\code\prairie_view\notebooks\2021-04-20_calc_offset.py in ----> 2 from prairie_view.files import read_reshape_and_copy 3 from glob import glob 4 5 ref_zseries_dir = r"E:\tyler\2021-04-20_wt-chrmine_6dpf_6f\fish1\TSeries-zstack-motion-correction-etl-052" 6 \\oak-smb-deissero.stanford.edu\groups\deissero\users\tyler\code\prairie_view\prairie_view\files.py in <module> ----> 1 import glia 2 import matplotlib.pyplot as plt, numpy as np 3 4 def read_and_copy(index_path_tuple, k=lambda x: x): 5 index, path = index_path_tuple ~\Miniconda3\envs\tyler\lib\site-packages\glia\__init__.py in <module> 1 from .analysis import * ----> 2 from .artificial import * 3 from .machine_learning import * 4 from .eyecandy import * 5 from .files import * ~\Miniconda3\envs\tyler\lib\site-packages\glia\artificial.py in <module> 6 import matplotlib.pyplot as plt 7 from typing import List, Any, Union ----> 8 from .functional import f_filter, f_map, f_reduce 9 from scipy import signal 10 from glia.types import Unit ~\Miniconda3\envs\tyler\lib\site-packages\glia\functional.py in <module> 8 from multiprocessing import Pool 9 from multiprocessing.pool import ThreadPool ---> 10 from .config import processes 11 import glia.config as config 12 from tqdm.auto import tqdm ~\Miniconda3\envs\tyler\lib\site-packages\glia\config.py in <module> 34 resource_path = '/'.join(('..', 'resources', '3brain_channel_map.npy')) # Do not use os.path.join() 35 # or for a file-like stream: ---> 36 channel_map_file = pkg_resources.resource_stream(resource_package, resource_path) 37 38 channel_map_3brain = np.load(channel_map_file) ~\Miniconda3\envs\tyler\lib\site-packages\pkg_resources\__init__.py in resource_stream(self, package_or_requirement, resource_name) 1147 def resource_stream(self, package_or_requirement, resource_name): 1148 """Return a readable file-like object for specified resource""" -> 1149 return get_provider(package_or_requirement).get_resource_stream( 1150 self, resource_name 1151 ) ~\Miniconda3\envs\tyler\lib\site-packages\pkg_resources\__init__.py in get_resource_stream(self, manager, resource_name) 1621 1622 def get_resource_stream(self, manager, resource_name): -> 1623 return open(self._fn(self.module_path, resource_name), 'rb') 1624 1625 def _get(self, path): FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Users\\User\\Miniconda3\\envs\\tyler\\lib\\site-packages\\glia\\..\\resources\\3brain_channel_map.npy'
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pip install git+https://github.com/tbenst/glia.git
should workThe text was updated successfully, but these errors were encountered: