A pipeline to select the best K (number of clusters) for fastPHASE imputation and phasing.

A pipeline for phasing haploptypes using short readbackphased haplotype blocks in population of samples.

Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.

Tools for handling phase retrieval and related tasks in sparse (low-signal) X-ray single particle imaging applications, specifically COACS.

scripts associated with yam genome assembly

LD-based phasing algorithm for segregating F1 populations (pseudo-oneway testcross)

Easy, fast, configurable version of phasor. Perfect for students who what to start with analyzing Coherent X-ray Diffraction Data.

Microsatellite genotyping

Minor Variant Calling and Phasing Tools

An efficient genetic data imputation pipeline

VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.

A phasing and imputation pipeline for NGS data

Step-by-step guide to different types of phasing and testing their accuracy

Pipeline for genotype phasing using SHAPEIT4

psychedelic visual synthesizer color-organ style

Bayesian haplotype-based mutation calling

Set of scripts used for the paper "A Neurodegenerative Disease Landscape of Rare Mutations in Colombia Due to Founder Effects"

Autoencoders for genomic data compression, classification, imputation, phasing and simulation.