You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I use vsearch usearch_global --self a lot on a 16s database and it works great. But sometimes I get a sequence match to a 16s allele from the same genome as my query sequence. A --selfmap filename argument would be great to group sequences by accession or genome or whatever so they couldn't match each other. The file could be a headerless csv: label,genome_label. One additional specification would be label could appear multiple times in a map fle to multiple genome_label groups. In other words, a sequence could be a member of multiple genomes which is weird but also useful.
Thanks!
The text was updated successfully, but these errors were encountered:
I use
vsearch usearch_global --self
a lot on a 16s database and it works great. But sometimes I get a sequence match to a 16s allele from the same genome as my query sequence. A--selfmap filename
argument would be great to group sequences by accession or genome or whatever so they couldn't match each other. The file could be a headerless csv: label,genome_label. One additional specification would be label could appear multiple times in a map fle to multiple genome_label groups. In other words, a sequence could be a member of multiple genomes which is weird but also useful.Thanks!
The text was updated successfully, but these errors were encountered: