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Feature request --selfmap filename or --self optional filename or etc #461

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crosenth opened this issue Nov 2, 2021 · 0 comments
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@crosenth
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crosenth commented Nov 2, 2021

I use vsearch usearch_global --self a lot on a 16s database and it works great. But sometimes I get a sequence match to a 16s allele from the same genome as my query sequence. A --selfmap filename argument would be great to group sequences by accession or genome or whatever so they couldn't match each other. The file could be a headerless csv: label,genome_label. One additional specification would be label could appear multiple times in a map fle to multiple genome_label groups. In other words, a sequence could be a member of multiple genomes which is weird but also useful.

Thanks!

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