Allow customized config

[maotian06]

I encountered this issue running a WGS sample with multiple FASTQs. The run failed due to a memory issue in align-DNA. Not sure if we could customize this, so I changed the setting in the align-DNA by reducing the 56 CPUs to 36:

withName: align_DNA_BWA_MEM2 {
        cpus = 36
        }

@yashpatel6 Is there a way to customize this in the config file?

[yashpatel6]

Hmm you can try updating this line:

metapipeline-DNA/config/template.config

Line 37 in 7759205

subworkflow_cpus = 72

Generally, the metapipeline doesn't directly set any resource allocations for the individual pipelines; if there is a memory error showing up with one of the pipelines, it should really be addressed in that pipeline (probably with some sort of retry mechanism)