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Merge pull request #27 from unipept/tryptic-search

SimonVandeVyvercreated search-peptides-opt • 26dd5e5 • 
on Dec 2, 2024

change link to unipept-libsais to https

SimonVandeVyverpushed 1 commit to building-sa-opt • 0879f4e…1cd0465 • 
on Oct 28, 2024

cargo clippy

SimonVandeVyverpushed 1 commit to building-sa-opt • 1ff2e0f…0879f4e • 
on Oct 28, 2024

cargo fmt

SimonVandeVyverpushed 1 commit to building-sa-opt • bfd9069…1ff2e0f • 
on Oct 28, 2024

adapt tests to pass text not as reference

SimonVandeVyverpushed 1 commit to building-sa-opt • 0fc7431…bfd9069 • 
on Oct 25, 2024

take ownership of text when bitpacking, don't keep both texts in memory

SimonVandeVyverpushed 1 commit to building-sa-opt • 4fd936f…0fc7431 • 
on Oct 25, 2024

set max sparseness to 5

SimonVandeVyverpushed 1 commit to building-sa-opt • d436dfd…4fd936f • 
on Oct 25, 2024

keep bitpacked text owned before use

SimonVandeVyverpushed 1 commit to building-sa-opt • b91a759…d436dfd • 
on Oct 25, 2024

allow sparseness 6 for libsais

SimonVandeVyverpushed 1 commit to building-sa-opt • d2feb52…b91a759 • 
on Oct 25, 2024

cargo fmt

SimonVandeVyverpushed 1 commit to building-sa-opt • 6dccb19…d2feb52 • 
on Oct 24, 2024

run clippy

Force push
SimonVandeVyverforce pushed to building-sa-opt • 94894a8…6dccb19 • 
on Oct 24, 2024

run cargo fmt

SimonVandeVyverpushed 1 commit to building-sa-opt • 6dccb19…94894a8 • 
on Oct 24, 2024

run clippy

SimonVandeVyverpushed 3 commits to building-sa-opt • aa6ef9f…6dccb19 • 
on Oct 24, 2024

add comments + do not bitpack text sparseness is 1

SimonVandeVyverpushed 1 commit to building-sa-opt • 64e5589…aa6ef9f • 
on Oct 24, 2024

add support for 8-bit libsais text

SimonVandeVyverpushed 1 commit to building-sa-opt • 13a6d69…64e5589 • 
on Oct 23, 2024

minor changes

SimonVandeVyverpushed 1 commit to building-sa-opt • f1dc185…13a6d69 • 
on Oct 23, 2024

allow all sparseness factors

SimonVandeVyverpushed 1 commit to building-sa-opt • ae2e5fa…f1dc185 • 
on Oct 22, 2024

bugfix: check if libsais_sparseness big enough

SimonVandeVyverpushed 1 commit to building-sa-opt • bba56bb…ae2e5fa • 
on Oct 22, 2024

set max alfabet size to 2^28

SimonVandeVyverpushed 1 commit to building-sa-opt • 0ecb79e…bba56bb • 
on Oct 22, 2024

support for sparseness factor up to 6

SimonVandeVyverpushed 1 commit to building-sa-opt • 0424cd3…0ecb79e • 
on Oct 22, 2024

use adapted libsais library

SimonVandeVyverpushed 1 commit to building-sa-opt • 9053d25…0424cd3 • 
on Oct 18, 2024

bugfix shift overflow

SimonVandeVyverpushed 1 commit to building-sa-opt • 1b15fad…9053d25 • 
on Oct 14, 2024

remove unused import

SimonVandeVyverpushed 1 commit to building-sa-opt • 8d72316…1b15fad • 
on Oct 14, 2024

remove debug code

SimonVandeVyverpushed 1 commit to building-sa-opt • c09b61a…8d72316 • 
on Oct 14, 2024

fixed tests for libsais with bitpacking

SimonVandeVyverpushed 1 commit to building-sa-opt • 850b2ee…c09b61a • 
on Oct 14, 2024

use global variable for bits_per_char

SimonVandeVyverpushed 1 commit to building-sa-opt • c94df8d…850b2ee • 
on Oct 14, 2024

SA construction with bitpacking

SimonVandeVyvercreated building-sa-opt • c94df8d • 
on Oct 14, 2024

Merge pull request #27 from unipept/tryptic-search

pverschapushed 41 commits to main • d52483c…26dd5e5 • 
on Sep 19, 2024

Merge pull request #27 from unipept/tryptic-search

Pull request merge
pverschapushed 12 commits to develop • 4d63609…26dd5e5 • 
on Sep 19, 2024

Fixed tests because of added symbols

pverschapushed 1 commit to tryptic-search • 5094fbf…9a50fca • 
on Sep 19, 2024