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Should we make a bioconda package with the scripts in this repo? #263

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pcm32 opened this issue Jan 10, 2020 · 2 comments
Open

Should we make a bioconda package with the scripts in this repo? #263

pcm32 opened this issue Jan 10, 2020 · 2 comments

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@pcm32
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pcm32 commented Jan 10, 2020

Thanks for all the great things here, we reuse the same yaml structure for our own CI that installs our tools in our local instances. This includes having our own replicated copy of the scripts available here. Would it make sense to maintain those separately from the actual set of eu-tools? Then I can consume them from there and avoid the duplication. Happy to do the leg work, but I want to make sure that such addition and change would be acceptable here before spending the time. Thanks!

@bgruening
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@pcm32 mh, I think I don't understand? What do you need to add to avoid the other repo?

You know I'm all in for de-duplication if this is possible :)

@pcm32
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pcm32 commented Jan 10, 2020

I currently have https://github.com/ebi-gene-expression-group/galaxy-gxa-tools-setup which duplicates partly your scripts in this repo. I thought of consuming this repo for the scripts and mine for the rest of the tools files that we want to install, but in the end it was easier for the CI/CD part to have the scripts part duplicated on my repo. So I thought, if maybe the scripts are conda installable, I then wouldn't need to duplicate the EU scripts on our repo.

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