To test a fresh installation of WIPP, we provide three sample datasets with instructions on how to run test workflows using these datasets.
- A running instance of the WIPP system (installation instructions)
- Being familiar with the notions of images collections, plugins and workflows (user guide)
- The following plugins are registered in the WIPP system being tested (how to register a plugin):
- Thresholding (link to plugin manifest)
- MIST - Microscopy Image Stitching Tool (link to plugin manifest)
- Pyramid Building (link to plugin manifest)
- Image Assembling (link to plugin manifest)
- EGT Segmentation (link to plugin manifest)
- Feature Extraction (link to plugin manifest)
Sample dataset of one image (~457KB), to be thresholded using the Otsu algorithm.
Sample dataset of 16 images (~3.8MB) and one stitching vector, to create a pyramid view of the 4x4 grid.
A multistep workflow including stitching, pyramid building, segmentation and feature extraction, using a small dataset of fluorescent images (~80MB).