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Hi, I'm trying to install GRCh38 from Ensembl using genomepy.install_genome(name='GRCh38', provider='Ensembl') and running into the following error:
genomepy.install_genome(name='GRCh38', provider='Ensembl')
--------------------------------------------------------------------------- GenomeDownloadError Traceback (most recent call last) Cell In[15], line 1 ----> 1 genomepy.install_genome(name='GRCh38', provider='Ensembl') File [/opt/conda/lib/python3.11/site-packages/genomepy/functions.py:208](http://localhost:8890/lab/tree/code/cryptic-splicing/opt/conda/lib/python3.11/site-packages/genomepy/functions.py#line=207), in install_genome(name, provider, genomes_dir, localname, mask, keep_alt, regex, invert_match, bgzip, annotation, only_annotation, skip_matching, skip_filter, threads, force, **kwargs) 206 out_dir = os.path.join(genomes_dir, localname) 207 genome_file = os.path.join(out_dir, f"{localname}.fa") --> 208 provider = _provider_selection(name, localname, genomes_dir, provider) 210 # check which files need to be downloaded 211 genome_found = _is_genome_dir(out_dir) File [/opt/conda/lib/python3.11/site-packages/genomepy/functions.py:371](http://localhost:8890/lab/tree/code/cryptic-splicing/opt/conda/lib/python3.11/site-packages/genomepy/functions.py#line=370), in _provider_selection(name, localname, genomes_dir, provider) 368 if p in ["ensembl", "ucsc", "ncbi"]: 369 provider = p --> 371 return _lazy_provider_selection(name, provider) File [/opt/conda/lib/python3.11/site-packages/genomepy/functions.py:352](http://localhost:8890/lab/tree/code/cryptic-splicing/opt/conda/lib/python3.11/site-packages/genomepy/functions.py#line=351), in _lazy_provider_selection(name, provider) 349 return p 351 if len(providers): --> 352 raise GenomeDownloadError(f"{name} not found on {', '.join(providers)}.") 353 sys.exit(0) GenomeDownloadError: GRCh38 not found on Ensembl.
However it works with GRCh37. Am I doing something wrong?
The text was updated successfully, but these errors were encountered:
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Hi, I'm trying to install GRCh38 from Ensembl using
genomepy.install_genome(name='GRCh38', provider='Ensembl')
and running into the following error:However it works with GRCh37. Am I doing something wrong?
The text was updated successfully, but these errors were encountered: