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Issue running gimme maelstrom #321

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hrc312 opened this issue Jan 16, 2025 · 0 comments
Open

Issue running gimme maelstrom #321

hrc312 opened this issue Jan 16, 2025 · 0 comments

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@hrc312
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hrc312 commented Jan 16, 2025

I am having an issue running gimme maelstrom. It will get through most of the steps and then fail when trying to generate the list of non-redundant motifs. Each time I run it I get a different motif cannot be found. Here is an example of my output:

File "/gpfs/share/apps/anaconda3/gpu/5.2.0/envs/gimme/bin/gimme", line 11, in
cli(sys.argv[1:])
File "/gpfs/share/apps/anaconda3/gpu/5.2.0/envs/gimme/lib/python3.9/site-packages/gimmemotifs/cli.py", line 730, in cli
args.func(args)
File "/gpfs/share/apps/anaconda3/gpu/5.2.0/envs/gimme/lib/python3.9/site-packages/gimmemotifs/commands/maelstrom.py", line 33, in maelstrom
run_maelstrom(
File "/gpfs/share/apps/anaconda3/gpu/5.2.0/envs/gimme/lib/python3.9/site-packages/gimmemotifs/maelstrom.py", line 546, in run_maelstrom
maelstrom_html_report(outdir, os.path.join(outdir, "final.out.txt"), pfmfile)
File "/gpfs/share/apps/anaconda3/gpu/5.2.0/envs/gimme/lib/python3.9/site-packages/gimmemotifs/report.py", line 868, in maelstrom_html_report
motif_to_img_series(df.index, pfmfile=pfmfile, outdir=outdir, subdir="logos"),
File "/gpfs/share/apps/anaconda3/gpu/5.2.0/envs/gimme/lib/python3.9/site-packages/gimmemotifs/report.py", line 837, in motif_to_img_series
raise ValueError(f"Motif {motif} does not occur in motif database")
ValueError: Motif GM.5.0.C2H2_ZF.0045 does not occur in motif database

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