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Bealign refactor and upgrade #53

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stephenshank opened this issue Oct 30, 2023 · 1 comment

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stephenshank commented Oct 30, 2023

The following would be nice to have:

extract bealign as a standalone C application
come up with a working WASM build, ideally with parallelism (need to gather requirements and see if WASM supports things like OpenMP or pthreads)
algorithmic improvements (@spond feel free to chime in here)

stephenshank self-assigned this

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stephenshank commented Oct 31, 2023

Slack correspondence 10/31/23:

The main headache is reading/storing correctly formatted scoring matrices, which are currently being consumed as HyPhy dictionaries. I think the way to go is to use JSON for storage, and stdlib for processing.

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