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bring in cyc pathways #47

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ajo2995 opened this issue Apr 5, 2016 · 0 comments
Open

bring in cyc pathways #47

ajo2995 opened this issue Apr 5, 2016 · 0 comments

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@ajo2995
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ajo2995 commented Apr 5, 2016

The cyc pathways are not actively maintained, but we do still host them and it is possible to associate them with genes...

Here is an example set of arabidopsis genes associated with photosynthesis light reactions.

http://pathway.iplantcollaborative.org/ARA/pathway-genes?object=PWY-101

scope of work:
generate a pathways collection
gather gene annotations to reactions/pathways (from ftp site?)
extend swagger schema
produce solr suggestions from pathways collection
extend solr genes schema if necessary

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