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1C_meth.md

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17 lines (13 loc) · 10.6 KB
for i in "ds3" "ds12" "mix" "dds3"
do
python3 TestUsingGivenProfile2.py k60 mix_k60_F1 ${i} -100 ACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCA GTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGA ATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAG TAGCCAAAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGA CACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAA CACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAG CCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAA CACACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACA CTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAACAGTA ATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAAC TCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAACAGTAA AAAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTG AAGTACCAGTGAAGATGCTGGTTACCCGCGCCAGGACGGAAAGACCCCATGGAGCTTTAC CTGTTCACACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGAC ACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAAA ACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGC ACACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAA TATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAA ATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCA AATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATA TGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAACA AATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCG AAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGG AATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAAT AATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGC GAATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAA AAAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTG ATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCA CCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAACGGAGTGAACAG GTTACTGTTCACTCCGTTCACAGTAACGTAGCCAAAATTCATTCCAGATTGCCTGCGGCA CGGTGAAATTGAAGTACCAGTGAAGATGCTGGTTACCCGCGCCAGGACGGAAAGACCCCA CTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACA AGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCCG AATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGC ATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAACGGAGTGAACAGTA AATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAACGGAGTGA CCCGTCGGTGTCGCAGTCAAGCTCCCTTCTGCCTTTGCACTCTTCGAATGGTTTCCAACC ACAGTAACGTAGCCAAAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTAT TCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAACGGAGTGAACA TCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCA CGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGC ATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAA GTGCTTTCTCCAAATCCTTAAGCTGTGCCTCTAATCCTTTCACTGCTTCATCAAAATACA CGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAACAGTAAC CCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAACGGA ACTGTTCACACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGA GCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACC GAAGTACCAGTGAAGATGCTGGTTACCCGCGCCAGGACGGAAAGACCCCATGGAGCTTTA AGTAAAGCTCCATGGGGTCTTTCCGTCCTGGCGCGGGTAACCAGCATCTTCACTGGTACT GGTCAAGCGGTTAAGACATCGCCCTTTCACGGCGGTAACACGGGTTCGATTCCCGTCGGA CAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATG AAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGG GTTCACTCCGTTCACAGTAACGTAGCCAAAATTCATTCCAGATTGCCTGCGGCAATGGAA CCGGTGAAATTGAAGTACCAGTGAAGATGCTGGTTACCCGCGCCAGGACGGAAAGACCCC GATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCC CGTGTTTCAGCCCCGGACATTTTCGGCGCAGGACCTCTCGACTAGTGAGCTATTACGCAC AAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAAC AACGTAGCCAAAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTC GAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCC CCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAAC AGCCAAAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGAT ATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAAATTC CCTCAGAATGGTTGGAAACCATTCGAAGAGTGCAAAGGCAGAAGGGAGCTTGACTGCGAC GAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGA CACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCC GAAATTGAAGTACCAGTGAAGATGCTGGTTACCCGCGCCAGGACGGAAAGACCCCATGGA ATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGG CATGGGGTCTTTCCGTCCTGGCGCGGGTAACCAGCATCTTCACTGGTACTTCAATTTCAC CCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACG CCTAAAGCTATTTCGAGGAGAACCAGCTATCTCCGGGTTCGATTGGAATTTCTCCCCTAC CTTTTCACCTTTCCTTCACAGTACTATGCGCTATCGGTCACTAAGTAGTATTTAGCCTTA TCCATCCAGTTTCTGAGCAATCTTCCTGCAAACAATTCCTAACGTGCTTGGCAGTTCCAA GTGTCGCAGTCAAGCTCCCTTCTGCCTTTGCACTCTTCGAATGGTTTCCAACCATTCTGA CGTACCTGCTCCACCCGTCGGTGTCGCAGTCAAGCTCCCTTCTGCCTTTGCACTCTTCGA ATAATTACAAAGAACAAAGCCAAAAGCATCGTAGATTGTCCGGTGTGGATCCCCAGATCC TATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGA GTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCA GGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGA GACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTAC AGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGC ATGAATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGG CACAGTAACGTAGCCAAAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTA GCTCACTGGTCGAGAGGTCCTGCGCCGAAAATGTCCGGGGCTGAAACACGACACCGAAGC AAATGGGACCTATAGGGCTCGAACCTATGACCCTCTGCTTGTAAGGCAGATGCTCTCCCA CAGAATGGTTGGAAACCATTCGAAGAGTGCAAAGGCAGAAGGGAGCTTGACTGCGACACC GAATGAACACAAAATTGTGATCGGTTCAACAGAGTTTGATTATGATGCAATGACGGTTAC AAAGGCAGAAGGGAGCTTGACTGCGACACCGACGGGTGGAGCAGGTACGAAAGTAGGACT AAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAACGGAGT GAAGAGTGCAAAGGCAGAAGGGAGCTTGACTGCGACACCGACGGGTGGAGCAGGTACGAA CAGTAACGTAGCCAAAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATG AAGGGTATCGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAACCATTCGAAGAGTGC CTCCACCCGTCGGTGTCGCAGTCAAGCTCCCTTCTGCCTTTGCACTCTTCGAATGGTTTC AAACAACAGTTGATGGATGAAGTATGGGGATACGAGACGGAGGCAGACCCACATACGATA ACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGA AGCACTGCTTCGCCGTGCACAGATACTGAATGAACACAAAATTGTGATCGGTTCAACAGA ATTGGTTGGTAATATTTTGCTGTTATCCAAGTTAGAGAATCAGAATATACCAATGAAAAA GCTAAATACTACTTAGTGACCGATAGCGCATAGTACTGTGAAGGAAAGGTGAAAAGGACC ATTCGAAGAGTGCAAAGGCAGAAGGGAGCTTGACTGCGACACCGACGGGTGGAGCAGGTA CCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCA CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTACGTTCGCAAGAATGAAACTCAAA
python3 TestUsingGivenProfile2.py k60 mix_k60_AUC ${i} -100 ACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCA GTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGA ATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAG TAGCCAAAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGA CACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAA CACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAG CCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAA CACACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACA CTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAACAGTA ATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAAC TCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAACAGTAA AAAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTG AAGTACCAGTGAAGATGCTGGTTACCCGCGCCAGGACGGAAAGACCCCATGGAGCTTTAC CTGTTCACACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGAC ACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAAA ACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGC ACACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAA TATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAA ATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCA AATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATA TGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAACA AATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACCTCGCG AAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGG AATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAAT AATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGC GAATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAA AAAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTG ATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCA CCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAACGGAGTGAACAG GTTACTGTTCACTCCGTTCACAGTAACGTAGCCAAAATTCATTCCAGATTGCCTGCGGCA CGGTGAAATTGAAGTACCAGTGAAGATGCTGGTTACCCGCGCCAGGACGGAAAGACCCCA CTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACA AGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCCG AATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGC ATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAACGGAGTGAACAGTA AATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAACGGAGTGA CCCGTCGGTGTCGCAGTCAAGCTCCCTTCTGCCTTTGCACTCTTCGAATGGTTTCCAACC ACAGTAACGTAGCCAAAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTAT TCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAACGGAGTGAACA TCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCA CGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGC ATGCCAAAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAA GTGCTTTCTCCAAATCCTTAAGCTGTGCCTCTAATCCTTTCACTGCTTCATCAAAATACA CGGGATTTTGGCATATTCATGCCAAAACACCTCGCGGGATAGTGGTGTGTGAACAGTAAC CCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAACGGA ACTGTTCACACACCACTATCCCGCGAGGTGTTTTGGCATGAATATGCCAAAATCCCGAGA GCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCCAAAACACC GAAGTACCAGTGAAGATGCTGGTTACCCGCGCCAGGACGGAAAGACCCCATGGAGCTTTA AGTAAAGCTCCATGGGGTCTTTCCGTCCTGGCGCGGGTAACCAGCATCTTCACTGGTACT GGTCAAGCGGTTAAGACATCGCCCTTTCACGGCGGTAACACGGGTTCGATTCCCGTCGGA CAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATG AAATCCCGAGACATACAAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGG GTTCACTCCGTTCACAGTAACGTAGCCAAAATTCATTCCAGATTGCCTGCGGCAATGGAA CCGGTGAAATTGAAGTACCAGTGAAGATGCTGGTTACCCGCGCCAGGACGGAAAGACCCC GATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTCGGGATTTTGGCATATTCATGCC CGTGTTTCAGCCCCGGACATTTTCGGCGCAGGACCTCTCGACTAGTGAGCTATTACGCAC AAGCCAAAATTCCATTGCCGCAGGCAATCTGGAATGAATTTTGGCTACGTTACTGTGAAC AACGTAGCCAAAATTCATTCCAGATTGCCTGCGGCAATGGAATTTTGGCTTGTATGTCTC
done

# PF05221 PF02741 PF01913 PF02007
# PF01993 PF02240 PF02745 PF02662 PF02505 PF03201 PF04211 PF04210 PF05440 PF02249 PF06253 PF09505 PF09472


# PF05221 PF02741 PF01913 PF02007 PF01993 PF02240 PF02745 PF02662 PF02505 PF03201 PF04211 PF04210 PF05440 PF02249 PF06253 PF09505 PF09472

# python3 TestUsingGivenProfile.py pfam 1C_methanogenesis mix PF05221 PF02741 PF01913 PF02007 PF01993 PF02240 PF02745 PF02662 PF02505 PF03201 PF04211 PF04210 PF05440 PF02249 PF06253 PF09505 PF09472
# python3 TestUsingGivenProfile.py pfam 1C_methanogenesis dds3 PF05221 PF02741 PF01913 PF02007 PF01993 PF02240 PF02745 PF02662 PF02505 PF03201 PF04211 PF04210 PF05440 PF02249 PF06253 PF09505 PF09472
# python3 TestUsingGivenProfile.py pfam 1C_methanogenesis ds3 PF05221 PF02741 PF01913 PF02007 PF01993 PF02240 PF02745 PF02662 PF02505 PF03201 PF04211 PF04210 PF05440 PF02249 PF06253 PF09505 PF09472
# python3 TestUsingGivenProfile.py pfam 1C_methanogenesis ds12 PF05221 PF02741 PF01913 PF02007 PF01993 PF02240 PF02745 PF02662 PF02505 PF03201 PF04211 PF04210 PF05440 PF02249 PF06253 PF09505 PF09472