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DESCRIPTION
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DESCRIPTION
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Package: CellChat
Type: Package
Title: Inference and analysis of cell-cell communication from single-cell transcriptomics data
Version: 1.5.0
Author: Suoqin Jin
Maintainer: Suoqin Jin <[email protected]>
Description: an open source R tool that infers, visualizes and analyzes the cell-cell communication networks from scRNA-seq data.
Depends: R (>= 3.6.0),dplyr,igraph,ggplot2
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports:
future,
future.apply,
pbapply,
irlba,
NMF (>= 0.23.0),
ggalluvial,
stringr,
svglite,
Matrix,
expm,
Rtsne,
ggrepel,
circlize (>= 0.4.12),
RColorBrewer,
cowplot,
methods,
ComplexHeatmap,
RSpectra,
Rcpp,
RcppEigen,
reticulate,
scales,
sna,
forcats,
reshape2,
FNN,
shape,
BiocGenerics,
magrittr,
patchwork,
colorspace,
plyr,
ggpubr
LinkingTo: Rcpp, RcppEigen
Suggests:
rmarkdown, knitr, roxygen2, Seurat (>= 3.0.0), SingleCellExperiment, SummarizedExperiment, purrr,uwot,gg.gap,wordcloud
RoxygenNote: 7.1.2
VignetteBuilder: knitr