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Fix build: Eigen has moved, and vcfUtils Makefile is referencing a file that does not exist #115

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Fix build: Eigen has moved, and vcfUtils Makefile is referencing a file that does not exist #115

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4 changes: 1 addition & 3 deletions third/Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -20,9 +20,7 @@ gsl: gsl-1.16.tar.gz
-(DIR=`pwd`; cd gsl-1.16; ./configure --prefix="$${DIR}"/gsl; make -j; make install)

eigen: eigen-3.3.7.tar.bz2
-rm -rf eigen-eigen*
tar jxf eigen-3.3.7.tar.bz2
-mv eigen-eigen-* eigen-3.3.7
ln -s -f eigen-3.3.7 eigen

zlib: zlib-1.2.8.tar.gz
Expand Down Expand Up @@ -81,7 +79,7 @@ pcre-8.36.tar.gz:

eigen-3.3.7.tar.bz2:
echo "obtain Eigen..."
$(call DOWNLOAD_RENAME,http://bitbucket.org/eigen/eigen/get/3.3.7.tar.bz2,$@)
$(call DOWNLOAD_RENAME,https://gitlab.com/libeigen/eigen/-/archive/3.3.7/eigen-3.3.7.tar.bz2,$@)

gsl-1.16.tar.gz:
echo "obtain GSL"
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2 changes: 1 addition & 1 deletion vcfUtils/Makefile
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Expand Up @@ -24,7 +24,7 @@ UTIL_EXEC = vcf2plink vcfSummary vcfConcordance \
createVCFIndex \
queryVCFIndex \
extractVCFIndex \
createBCF2Index \
# createBCF2Index \
# vcf2merlin

DIR_EXEC = ../executable
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