NAMESPACE

# Generated by roxygen2 (4.1.1): do not edit by hand

S3method(coef,DESeqDataSet)
export("dispersionFunction<-")
export("dispersions<-")
export("normalizationFactors<-")
export(DESeq)
export(DESeqDataSet)
export(DESeqDataSetFromHTSeqCount)
export(DESeqDataSetFromMatrix)
export(DESeqResults)
export(DESeqTransform)
export(collapseReplicates)
export(dispersionFunction)
export(dispersions)
export(estimateBetaPriorVar)
export(estimateDispersionsFit)
export(estimateDispersionsGeneEst)
export(estimateDispersionsMAP)
export(estimateDispersionsPriorVar)
export(estimateMLEForBetaPriorVar)
export(estimateSizeFactorsForMatrix)
export(fpkm)
export(fpm)
export(getVarianceStabilizedData)
export(makeExampleDESeqDataSet)
export(nbinomLRT)
export(nbinomWaldTest)
export(normTransform)
export(normalizationFactors)
export(normalizeGeneLength)
export(plotCounts)
export(plotSparsity)
export(removeResults)
export(replaceOutliers)
export(replaceOutliersWithTrimmedMean)
export(results)
export(resultsNames)
export(rlog)
export(rlogTransformation)
export(summary.DESeqResults)
export(varianceStabilizingTransformation)
exportClasses(DESeqDataSet)
exportClasses(DESeqResults)
exportClasses(DESeqTransform)
exportMethods("counts<-")
exportMethods("design<-")
exportMethods("dispersionFunction<-")
exportMethods("dispersions<-")
exportMethods("normalizationFactors<-")
exportMethods("sizeFactors<-")
exportMethods(counts)
exportMethods(design)
exportMethods(dispersionFunction)
exportMethods(dispersions)
exportMethods(estimateDispersions)
exportMethods(estimateSizeFactors)
exportMethods(normalizationFactors)
exportMethods(plotDispEsts)
exportMethods(plotMA)
exportMethods(plotPCA)
exportMethods(show)
exportMethods(sizeFactors)
import(Biobase)
import(BiocGenerics)
import(BiocParallel)
import(GenomicRanges)
import(IRanges)
import(Rcpp)
import(RcppArmadillo)
import(S4Vectors)
import(SummarizedExperiment)
import(ggplot2)
import(methods)
importFrom(Hmisc,wtd.quantile)
importFrom(genefilter,filtered_p)
importFrom(genefilter,rowVars)
importFrom(geneplotter,plotMA)
importFrom(locfit,locfit)
importFrom(stats,coef)
useDynLib(DESeq2)