The scripts for scWT analysis:
First run the shell script in pre-processing to handle the raw data.
Then scWT_fig_xx_re.R could be uesd for figure generating.
scWT_fig_01_re.R is used for fig1 generating.
scWT_fig_02_re.R is used for fig2 generating.
scWT_fig_03_re.R is used for fig3 generating.
scWT_fig_04_re.R is used for fig3 generating.
scWT_fig_S01_re.R is used for figS1 generating.
scWT_fig_S02_re.R is used for figS2 generating.
scWT_fig_S03_re.R is used for figS3 generating.
scWT_fig_S04_re.R is used for figS4 generating.
├── pre-processing
│ ├── run_scWT_bulk.sh
│ ├── run_scWT_drop.sh
│ └── sub-script
│ ├── BCFilter.py
│ ├── calcCells_other.R
│ ├── calcCells.R
│ ├── calcCov.py
│ ├── calcHybrid.py
│ ├── calcReads.py
│ ├── calcTrans.py
│ └── calcTrans.R
├── scWT_fig_01_re.R
├── scWT_fig_02_re.R
├── scWT_fig_03_re.R
├── scWT_fig_04_re.R
├── scWT_fig_S01_re.R
├── scWT_fig_S02_re.R
├── scWT_fig_S03_re.R
└── scWT_fig_S04_re.R