AMICI v0.11.27

New features:

• Checking condition number when computing sensitivities via Newton by @FFroehlich in #1730
• Removed SPBCG solver by @FFroehlich in #1729
• Added Newton step convergence checks to steadystate solver by @FFroehlich in #1737
• Removed legacy options/members amioption.newton_preeq and `Solver::r… by @dweindl in #1744
• Added ReturnData::cpu_time_total to track total time spent in runAmiciSimulation by @dweindl in #1743
• SBML import: Alternative algorithm for identifying conservation laws by @dweindl in #1748
• Use amici.AmiciVersionError to indicate version mismatch by @dweindl in #1764

Performance:

• Optional parallel computation of derivatives during model import by @dweindl in #1740
• Sparsify jacobian by @FFroehlich in #1766
• Speedup conservation law computation by @FFroehlich in #1754
• Exploit stoichiometric matrix in pysb import by @FFroehlich in #1761
• Speedup edata construction from petab problems by @FFroehlich in #1746

Fixes:

• Fixed get_model_settings that would to setting incorrect initial states and initial state sensitivities for models with parameter-dependent initial states by @dweindl in #1751
• Use correct tolerances for convergence check in Newton solver by @FFroehlich in #1728
• Harmonized convergence checks by @FFroehlich in #1731
• Made sundials' KLU_INDEXTYPE match actual klu index type by @dweindl in #1733
• Fixed Model::setStateIsNonNegative logic that would raise exceptions in cases where it shouldn't by @dweindl in #1736
• Fixed undefined reference to dladdr by @kristianmeyerr in #1738
• Fixed HDF5 OSX intermediate group creation errors by @dweindl in #1741
• Fixed recent cmake-based build issues due to changed sundials library directory by @dweindl in #1756
• Updated Windows installation instructions by @paulflang in #1763

... and other contributions by @FFroehlich, @dweindl

Full Changelog: v0.11.26...v0.11.27