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use circe as serde lib for json: 200 #214

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merged 41 commits into from
Jul 11, 2024
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use circe as serde lib for json: 200 #214

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f5e6795
Addid circe dependency and using it
TebaleloS Jun 14, 2024
8e8e746
merge master
TebaleloS Jun 14, 2024
ac908df
modifying dependencies
TebaleloS Jun 17, 2024
1dee384
merge master and use circe syntax in function classes
TebaleloS Jun 18, 2024
852d4fd
using circe syntax in flow classes
TebaleloS Jun 18, 2024
37b5434
using circe in api http module
TebaleloS Jun 18, 2024
eb77ba5
fix implicit import in ServerOptions
TebaleloS Jun 18, 2024
f6d2ece
merge master, fix dependencies and conclude server implicit implement…
TebaleloS Jun 21, 2024
3c707e6
removing play Json dependencies, and PlayJsonImplicits class
TebaleloS Jun 24, 2024
935cde0
removing play Json dependencies, and PlayJsonImplicits class
TebaleloS Jun 24, 2024
3c2ca00
fixing bugs and using circe instead of Json4s dependency
TebaleloS Jun 25, 2024
0f2b220
revised arrayPutUsing string implicit conversion
TebaleloS Jun 26, 2024
de28a5a
merge master
TebaleloS Jun 27, 2024
ad59999
removed json4s and replaced its usage
TebaleloS Jun 27, 2024
cc9e949
rolling back WriteCheckpointIntegrationTests.scala
TebaleloS Jul 1, 2024
3f5af81
defining implicits in the companiong object of the given DTOs
TebaleloS Jul 1, 2024
78b6149
fix compilation
salamonpavel Jul 1, 2024
9adff68
Fixing compilation
TebaleloS Jul 1, 2024
b124fb1
Defining ResultsValueType separate
TebaleloS Jul 1, 2024
a9e23e4
Defining private method for stringified json list
TebaleloS Jul 1, 2024
cf9cbb4
removing jacksonModuleScala
TebaleloS Jul 1, 2024
282d16e
removing scalaVersion parameter
TebaleloS Jul 1, 2024
cde28ee
removing scalaVersion parameter
TebaleloS Jul 1, 2024
c27ccb3
merging with remote
TebaleloS Jul 1, 2024
787d922
moving ResultsValueType to model and modify imports
TebaleloS Jul 1, 2024
66bbbc9
Merge branch 'master' into feature/#200-Use-circe-as-serde-lib-forjson
TebaleloS Jul 1, 2024
305ade5
Redefining ResultValueType custom types
TebaleloS Jul 2, 2024
a3d2b20
Merge branch 'feature/#200-Use-circe-as-serde-lib-forjson' of https:/…
TebaleloS Jul 2, 2024
c051b42
Update server/src/main/scala/za/co/absa/atum/server/api/database/runs…
TebaleloS Jul 4, 2024
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Apply suggestions from code review
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Applying GitHub comments
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merge remote changes
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Applying GitHub suggestions
TebaleloS Jul 4, 2024
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Applying GitHub suggestions
TebaleloS Jul 4, 2024
5208392
Fixing some test cases
TebaleloS Jul 5, 2024
4b457a3
implementing GitHub changes
TebaleloS Jul 8, 2024
21885c4
removing vals
TebaleloS Jul 8, 2024
24a5018
removing unsed pretty serialization
TebaleloS Jul 8, 2024
f0878b0
removing explicit serialization
TebaleloS Jul 8, 2024
479ec33
removing jsonb get method
TebaleloS Jul 9, 2024
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12 changes: 7 additions & 5 deletions agent/src/main/scala/za/co/absa/atum/agent/dispatcher/HttpDispatcher.scala
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Expand Up @@ -22,7 +22,9 @@ import sttp.client3._
import sttp.model.Uri
import za.co.absa.atum.agent.exception.AtumAgentException.HttpException
import za.co.absa.atum.model.dto.{AdditionalDataSubmitDTO, AtumContextDTO, CheckpointDTO, PartitioningSubmitDTO}
import za.co.absa.atum.model.utils.SerializationUtils
import io.circe.generic.auto._
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This seems unused

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Yeah, we have defined our serde in companions, therefore we don't need generic.auto.

import io.circe.syntax.EncoderOps
import za.co.absa.atum.model.utils.JsonUtils.fromJson

class HttpDispatcher(config: Config) extends Dispatcher(config: Config) with Logging {
import HttpDispatcher._
Expand All @@ -47,19 +49,19 @@ class HttpDispatcher(config: Config) extends Dispatcher(config: Config) with Log
override protected[agent] def createPartitioning(partitioning: PartitioningSubmitDTO): AtumContextDTO = {
val request = commonAtumRequest
.post(createPartitioningEndpoint)
.body(SerializationUtils.asJson(partitioning))
.body(partitioning.asJson.noSpaces)
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I find this a bit inconsistent. If you intent to have the JsonUtils class with fromJsonString method, then I think you should use the asJsonString method instead of calling asJson.noSpaces. And this way it should be done all over the code base.

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@salamonpavel salamonpavel Jul 4, 2024 •
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Alternatively we could use extension methods.

object JsonSyntaxExtensions {
  implicit class JsonSerializationSyntax[T: Encoder](val obj: T) extends AnyVal {
    def asJsonString: String = obj.asJson.noSpaces
    def asJsonStringPretty: String = obj.asJson.spaces2
  }
  implicit class JsonDeserializationSyntax[T: Decoder](val jsonStr: String) extends AnyVal {
    def as: T = {
      decode[T](jsonStr) match {
        case Right(value) => value
        case Left(error) => throw new RuntimeException(s"Failed to decode JSON: $error")
      }
    }
  }
}

val person = Person("Alice", 30)
 
// Convert a Person instance to a compact JSON string
val jsonString = person.asJsonString
println(jsonString) // {"name":"Alice","age":30}
 
// Convert a Person instance to a pretty JSON string
val jsonPrettyString = person.asJsonStringPretty

val jsonStr = """{"name":"Bob","age":25}"""
 
// Convert a JSON string back to a Person instance
val personFromJson = jsonStr.as[Person]

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This I tried to do, but it keeps saying that JsonSerializationSyntax and JsonDeserializationSyntax must have one input and it must be val. So, I switched back to our old implementation.

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Working solution

object JsonSyntaxExtensions {
  implicit class JsonSerializationSyntax[T: Encoder](val obj: T)  {
    def asJsonString: String = obj.asJson.noSpaces
    def asJsonStringPretty: String = obj.asJson.spaces2
  }
  implicit class JsonDeserializationSyntax(val jsonStr: String) {
    def as[T: Decoder]: T = {
      decode[T](jsonStr) match {
        case Right(value) => value
        case Left(error) => throw new RuntimeException(s"Failed to decode JSON: $error")
      }
    }
  }
}


val response = backend.send(request)

SerializationUtils.fromJson[AtumContextDTO](
fromJson[AtumContextDTO](
handleResponseBody(response)
)
}

override protected[agent] def saveCheckpoint(checkpoint: CheckpointDTO): Unit = {
val request = commonAtumRequest
.post(createCheckpointEndpoint)
.body(SerializationUtils.asJson(checkpoint))
.body(checkpoint.asJson.noSpaces)

val response = backend.send(request)

Expand All @@ -69,7 +71,7 @@ class HttpDispatcher(config: Config) extends Dispatcher(config: Config) with Log
override protected[agent] def saveAdditionalData(additionalDataSubmitDTO: AdditionalDataSubmitDTO): Unit = {
val request = commonAtumRequest
.post(createAdditionalDataEndpoint)
.body(SerializationUtils.asJson(additionalDataSubmitDTO))
.body(additionalDataSubmitDTO.asJson.noSpaces)

val response = backend.send(request)

Expand Down
26 changes: 13 additions & 13 deletions agent/src/main/scala/za/co/absa/atum/agent/model/Measure.scala
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Expand Up @@ -21,7 +21,7 @@ import org.apache.spark.sql.types.{DataType, DecimalType, LongType, StringType}
import org.apache.spark.sql.{Column, DataFrame}
import za.co.absa.atum.agent.core.MeasurementProcessor
import za.co.absa.atum.agent.core.MeasurementProcessor.MeasurementFunction
import za.co.absa.atum.model.dto.MeasureResultDTO.ResultValueType
import za.co.absa.atum.model.ResultValueType

/**
* Type of different measures to be applied to the columns.
Expand Down Expand Up @@ -57,7 +57,7 @@ object AtumMeasure {
}

override def measuredColumns: Seq[String] = Seq.empty
override val resultValueType: ResultValueType = ResultValueType.Long
override val resultValueType: ResultValueType = ResultValueType.LongValue
}
object RecordCount {
private[agent] val measureName: String = "count"
Expand All @@ -76,7 +76,7 @@ object AtumMeasure {
}

override def measuredColumns: Seq[String] = measuredCols
override val resultValueType: ResultValueType = ResultValueType.Long
override val resultValueType: ResultValueType = ResultValueType.LongValue
}
object DistinctRecordCount {
private[agent] val measureName: String = "distinctCount"
Expand All @@ -93,7 +93,7 @@ object AtumMeasure {
}

override def measuredColumns: Seq[String] = Seq(measuredCol)
override val resultValueType: ResultValueType = ResultValueType.BigDecimal
override val resultValueType: ResultValueType = ResultValueType.BigDecimalValue
}
object SumOfValuesOfColumn {
private[agent] val measureName: String = "aggregatedTotal"
Expand All @@ -110,7 +110,7 @@ object AtumMeasure {
}

override def measuredColumns: Seq[String] = Seq(measuredCol)
override val resultValueType: ResultValueType = ResultValueType.BigDecimal
override val resultValueType: ResultValueType = ResultValueType.BigDecimalValue
}
object AbsSumOfValuesOfColumn {
private[agent] val measureName: String = "absAggregatedTotal"
Expand All @@ -125,7 +125,7 @@ object AtumMeasure {
}

override def measuredColumns: Seq[String] = Seq(measuredCol)
override val resultValueType: ResultValueType = ResultValueType.String
override val resultValueType: ResultValueType = ResultValueType.StringValue
}
object SumOfHashesOfColumn {
private[agent] val measureName: String = "hashCrc32"
Expand All @@ -138,10 +138,10 @@ object AtumMeasure {
): Column = {
dataType match {
case _: LongType =>
// This is protection against long overflow, e.g. Long.MaxValue = 9223372036854775807:
// scala> sc.parallelize(List(Long.MaxValue, 1)).toDF.agg(sum("value")).take(1)(0)(0)
// This is protection against long overflow, e.g. LongValue.MaxValue = 9223372036854775807:
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// scala> sc.parallelize(List(LongValue.MaxValue, 1)).toDF.agg(sum("value")).take(1)(0)(0)
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// res11: Any = -9223372036854775808
// Converting to BigDecimal fixes the issue
// Converting to BigDecimalValue fixes the issue
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column.cast(DecimalType(38, 0))
case _: StringType =>
// Support for string type aggregation
Expand Down Expand Up @@ -170,21 +170,21 @@ object AtumMeasure {

/**
* This method converts a given value to string.
* It is a workaround for different serializers generating different JSONs for BigDecimal.
* It is a workaround for different serializers generating different JSONs for BigDecimalValue.
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* See https://stackoverflow.com/questions/61973058/json-serialization-of-bigdecimal-returns-scientific-notation
*
* @param value A value to convert
* @return A string representation of the value
*/
private def workaroundBigDecimalIssues(value: Any): String =
// If aggregated value is java.math.BigDecimal, convert it to scala.math.BigDecimal
// If aggregated value is java.math.BigDecimalValue, convert it to scala.math.BigDecimalValue
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value match {
case v: java.math.BigDecimal =>
// Convert the value to string to workaround different serializers generate different JSONs for BigDecimal
// Convert the value to string to workaround different serializers generate different JSONs for BigDecimalValue
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v.stripTrailingZeros // removes trailing zeros (2001.500000 -> 2001.5, but can introduce scientific notation (600.000 -> 6E+2)
.toPlainString // converts to normal string (6E+2 -> "600")
case v: BigDecimal =>
// Convert the value to string to workaround different serializers generate different JSONs for BigDecimal
// Convert the value to string to workaround different serializers generate different JSONs for BigDecimalValue
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new java.math.BigDecimal(
v.toString()
).stripTrailingZeros // removes trailing zeros (2001.500000 -> 2001.5, but can introduce scientific notation (600.000 -> 6E+2)
Expand Down
10 changes: 5 additions & 5 deletions agent/src/main/scala/za/co/absa/atum/agent/model/MeasureResult.scala
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Expand Up @@ -17,7 +17,7 @@
package za.co.absa.atum.agent.model

import za.co.absa.atum.agent.exception.AtumAgentException.MeasurementException
import za.co.absa.atum.model.dto.MeasureResultDTO.ResultValueType
import za.co.absa.atum.model.ResultValueType

/**
* This trait defines a contract for a measure result.
Expand Down Expand Up @@ -80,13 +80,13 @@ object MeasureResult {
resultValue match {

case l: Long =>
MeasureResultProvided[Long](l, ResultValueType.Long)
MeasureResultProvided[Long](l, ResultValueType.LongValue)
case d: Double =>
MeasureResultProvided[Double](d, ResultValueType.Double)
MeasureResultProvided[Double](d, ResultValueType.DoubleValue)
case bd: BigDecimal =>
MeasureResultProvided[BigDecimal](bd, ResultValueType.BigDecimal)
MeasureResultProvided[BigDecimal](bd, ResultValueType.BigDecimalValue)
case s: String =>
MeasureResultProvided[String](s, ResultValueType.String)
MeasureResultProvided[String](s, ResultValueType.StringValue)

case unsupportedType =>
val className = unsupportedType.getClass.getSimpleName
Expand Down
3 changes: 2 additions & 1 deletion agent/src/main/scala/za/co/absa/atum/agent/model/MeasurementBuilder.scala
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Expand Up @@ -17,6 +17,7 @@
package za.co.absa.atum.agent.model

import za.co.absa.atum.agent.exception.AtumAgentException.MeasurementException
import za.co.absa.atum.model.dto.MeasureResultDTO.TypedValue
import za.co.absa.atum.model.dto.{MeasureDTO, MeasureResultDTO, MeasurementDTO}

/**
Expand All @@ -41,7 +42,7 @@ private [agent] object MeasurementBuilder {
val measureDTO = MeasureDTO(measure.measureName, measure.measuredColumns)

val measureResultDTO = MeasureResultDTO(
MeasureResultDTO.TypedValue(measureResult.resultValue.toString, measureResult.resultValueType)
TypedValue(measureResult.resultValue.toString, measureResult.resultValueType)
)
MeasurementDTO(measureDTO, measureResultDTO)
}
Expand Down
10 changes: 5 additions & 5 deletions agent/src/test/scala/za/co/absa/atum/agent/AtumContextUnitTests.scala
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Expand Up @@ -25,8 +25,8 @@ import org.scalatest.matchers.should.Matchers
import za.co.absa.atum.agent.AtumContext.AtumPartitions
import za.co.absa.atum.agent.model.AtumMeasure.{RecordCount, SumOfValuesOfColumn}
import za.co.absa.atum.agent.model.{Measure, MeasureResult, MeasurementBuilder, UnknownMeasure}
import za.co.absa.atum.model.ResultValueType
import za.co.absa.atum.model.dto.CheckpointDTO
import za.co.absa.atum.model.dto.MeasureResultDTO.ResultValueType

class AtumContextUnitTests extends AnyFlatSpec with Matchers {

Expand Down Expand Up @@ -100,7 +100,7 @@ class AtumContextUnitTests extends AnyFlatSpec with Matchers {
assert(argument.getValue.author == authorTest)
assert(argument.getValue.partitioning == AtumPartitions.toSeqPartitionDTO(atumPartitions))
assert(argument.getValue.measurements.head.result.mainValue.value == "3")
assert(argument.getValue.measurements.head.result.mainValue.valueType == ResultValueType.Long)
assert(argument.getValue.measurements.head.result.mainValue.valueType == ResultValueType.LongValue)
}

"createCheckpointOnProvidedData" should "create a Checkpoint on provided data" in {
Expand All @@ -115,7 +115,7 @@ class AtumContextUnitTests extends AnyFlatSpec with Matchers {
val measurements: Map[Measure, MeasureResult] = Map(
RecordCount("col") -> MeasureResult(1L),
SumOfValuesOfColumn("col") -> MeasureResult(BigDecimal(1)),
UnknownMeasure("customMeasureName", Seq("col"), ResultValueType.BigDecimal) -> MeasureResult(BigDecimal(1))
UnknownMeasure("customMeasureName", Seq("col"), ResultValueType.BigDecimalValue) -> MeasureResult(BigDecimal(1))
)

atumContext.createCheckpointOnProvidedData(
Expand Down Expand Up @@ -172,7 +172,7 @@ class AtumContextUnitTests extends AnyFlatSpec with Matchers {
assert(argumentFirst.getValue.author == authorTest)
assert(argumentFirst.getValue.partitioning == AtumPartitions.toSeqPartitionDTO(atumPartitions))
assert(argumentFirst.getValue.measurements.head.result.mainValue.value == "4")
assert(argumentFirst.getValue.measurements.head.result.mainValue.valueType == ResultValueType.Long)
assert(argumentFirst.getValue.measurements.head.result.mainValue.valueType == ResultValueType.LongValue)

atumContext.addMeasure(SumOfValuesOfColumn("columnForSum"))
when(mockAgent.currentUser).thenReturn(authorTest + "Another") // maybe a process changed the author / current user
Expand All @@ -185,7 +185,7 @@ class AtumContextUnitTests extends AnyFlatSpec with Matchers {
assert(argumentSecond.getValue.author == authorTest + "Another")
assert(argumentSecond.getValue.partitioning == AtumPartitions.toSeqPartitionDTO(atumPartitions))
assert(argumentSecond.getValue.measurements.tail.head.result.mainValue.value == "22.5")
assert(argumentSecond.getValue.measurements.tail.head.result.mainValue.valueType == ResultValueType.BigDecimal)
assert(argumentSecond.getValue.measurements.tail.head.result.mainValue.valueType == ResultValueType.BigDecimalValue)
}

"addAdditionalData" should "add key/value pair to map for additional data" in {
Expand Down
24 changes: 12 additions & 12 deletions agent/src/test/scala/za/co/absa/atum/agent/model/AtumMeasureUnitTests.scala
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Expand Up @@ -23,7 +23,7 @@ import org.scalatest.matchers.should.Matchers
import za.co.absa.atum.agent.AtumAgent
import za.co.absa.atum.agent.AtumContext.{AtumPartitions, DatasetWrapper}
import za.co.absa.atum.agent.model.AtumMeasure._
import za.co.absa.atum.model.dto.MeasureResultDTO.ResultValueType
import za.co.absa.atum.model.ResultValueType
import za.co.absa.spark.commons.test.SparkTestBase

class AtumMeasureUnitTests extends AnyFlatSpec with Matchers with SparkTestBase { self =>
Expand Down Expand Up @@ -94,17 +94,17 @@ class AtumMeasureUnitTests extends AnyFlatSpec with Matchers with SparkTestBase

// Assertions
assert(dfPersonCntResult.resultValue == "1000")
assert(dfPersonCntResult.resultValueType == ResultValueType.Long)
assert(dfPersonCntResult.resultValueType == ResultValueType.LongValue)
assert(dfFullCntResult.resultValue == "1000")
assert(dfFullCntResult.resultValueType == ResultValueType.Long)
assert(dfFullCntResult.resultValueType == ResultValueType.LongValue)
assert(dfFullSalaryAbsSumResult.resultValue == "2987144")
assert(dfFullSalaryAbsSumResult.resultValueType == ResultValueType.BigDecimal)
assert(dfFullSalaryAbsSumResult.resultValueType == ResultValueType.BigDecimalValue)
assert(dfFullHashResult.resultValue == "2044144307532")
assert(dfFullHashResult.resultValueType == ResultValueType.String)
assert(dfFullHashResult.resultValueType == ResultValueType.StringValue)
assert(dfExtraPersonSalarySumResult.resultValue == "2986144")
assert(dfExtraPersonSalarySumResult.resultValueType == ResultValueType.BigDecimal)
assert(dfExtraPersonSalarySumResult.resultValueType == ResultValueType.BigDecimalValue)
assert(dfFullSalarySumResult.resultValue == "2987144")
assert(dfFullSalarySumResult.resultValueType == ResultValueType.BigDecimal)
assert(dfFullSalarySumResult.resultValueType == ResultValueType.BigDecimalValue)
}

"AbsSumOfValuesOfColumn" should "return expected value" in {
Expand All @@ -119,7 +119,7 @@ class AtumMeasureUnitTests extends AnyFlatSpec with Matchers with SparkTestBase
val result = salaryAbsSum.function(df)

assert(result.resultValue == "300.3")
assert(result.resultValueType == ResultValueType.BigDecimal)
assert(result.resultValueType == ResultValueType.BigDecimalValue)
}

"AbsSumOfValuesOfColumn" should "return expected value for null result" in {
Expand All @@ -134,7 +134,7 @@ class AtumMeasureUnitTests extends AnyFlatSpec with Matchers with SparkTestBase
val result = salaryAbsSum.function(df)

assert(result.resultValue == "0")
assert(result.resultValueType == ResultValueType.BigDecimal)
assert(result.resultValueType == ResultValueType.BigDecimalValue)
}

"RecordCount" should "return expected value" in {
Expand All @@ -149,7 +149,7 @@ class AtumMeasureUnitTests extends AnyFlatSpec with Matchers with SparkTestBase
val result = distinctCount.function(df)

assert(result.resultValue == "4")
assert(result.resultValueType == ResultValueType.Long)
assert(result.resultValueType == ResultValueType.LongValue)
}

"DistinctRecordCount" should "return expected value for multiple columns" in {
Expand All @@ -164,7 +164,7 @@ class AtumMeasureUnitTests extends AnyFlatSpec with Matchers with SparkTestBase
val result = distinctCount.function(df)

assert(result.resultValue == "3")
assert(result.resultValueType == ResultValueType.Long)
assert(result.resultValueType == ResultValueType.LongValue)
}

"DistinctRecordCount" should "fail requirements when no control columns given" in {
Expand All @@ -183,7 +183,7 @@ class AtumMeasureUnitTests extends AnyFlatSpec with Matchers with SparkTestBase
val result = distinctCount.function(df)

assert(result.resultValue == "4")
assert(result.resultValueType == ResultValueType.BigDecimal)
assert(result.resultValueType == ResultValueType.BigDecimalValue)
}

}
14 changes: 7 additions & 7 deletions agent/src/test/scala/za/co/absa/atum/agent/model/MeasureUnitTests.scala
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Expand Up @@ -21,9 +21,9 @@ import org.scalatest.matchers.should.Matchers
import za.co.absa.atum.agent.AtumAgent
import za.co.absa.atum.agent.AtumContext.AtumPartitions
import za.co.absa.atum.agent.model.AtumMeasure.{AbsSumOfValuesOfColumn, RecordCount, SumOfHashesOfColumn, SumOfValuesOfColumn}
import za.co.absa.atum.model.dto.MeasureResultDTO.ResultValueType
import za.co.absa.spark.commons.test.SparkTestBase
import za.co.absa.atum.agent.AtumContext._
import za.co.absa.atum.model.ResultValueType

class MeasureUnitTests extends AnyFlatSpec with Matchers with SparkTestBase { self =>

Expand Down Expand Up @@ -92,17 +92,17 @@ class MeasureUnitTests extends AnyFlatSpec with Matchers with SparkTestBase { se

// Assertions
assert(dfPersonCntResult.resultValue == "1000")
assert(dfPersonCntResult.resultValueType == ResultValueType.Long)
assert(dfPersonCntResult.resultValueType == ResultValueType.LongValue)
assert(dfFullCntResult.resultValue == "1000")
assert(dfFullCntResult.resultValueType == ResultValueType.Long)
assert(dfFullCntResult.resultValueType == ResultValueType.LongValue)
assert(dfFullSalaryAbsSumResult.resultValue == "2987144")
assert(dfFullSalaryAbsSumResult.resultValueType == ResultValueType.BigDecimal)
assert(dfFullSalaryAbsSumResult.resultValueType == ResultValueType.BigDecimalValue)
assert(dfFullHashResult.resultValue == "2044144307532")
assert(dfFullHashResult.resultValueType == ResultValueType.String)
assert(dfFullHashResult.resultValueType == ResultValueType.StringValue)
assert(dfExtraPersonSalarySumResult.resultValue == "2986144")
assert(dfExtraPersonSalarySumResult.resultValueType == ResultValueType.BigDecimal)
assert(dfExtraPersonSalarySumResult.resultValueType == ResultValueType.BigDecimalValue)
assert(dfFullSalarySumResult.resultValue == "2987144")
assert(dfFullSalarySumResult.resultValueType == ResultValueType.BigDecimal)
assert(dfFullSalarySumResult.resultValueType == ResultValueType.BigDecimalValue)
}

}
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