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Long tests

Long tests #3

Workflow file for this run

name: Long tests
on:
workflow_dispatch:
workflow_call:
jobs:
test:
timeout-minutes: 7200
runs-on: [self-hosted, Linux, X64]
strategy:
fail-fast: false
matrix:
jobname: ["QB_A08_A07", "QB_A15_A14", "QB_A16_A06"]
defaults: # Needed for conda
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
with:
lfs: true
submodules: true
- uses: conda-incubator/setup-miniconda@v3
with:
python-version: "3.10"
channels: acellera,conda-forge
- name: Lint with flake8
run: |
pip install flake8 coverage pytest-cov pytest pytest-subtests
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Install conda deps
run: |
conda install mamba
mamba install -y -q --file conda_deps.txt python=3.10
- name: Install package
run: |
pip install .
- name: List conda environment
run: conda list
- name: Export conda environment
run: conda env export --name test
- name: Test
run: |
pytest ./tests_long -s -k ${{ matrix.jobname }}