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use pmap in literate examples #190

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use pmap in literate examples #190

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b793d4d
use pmap in literate examples
jpfairbanks Jan 25, 2024
1fb01bb
reduce runtime of brusselator_bounded.jl example
jpfairbanks Feb 26, 2024
9a60941
Merge branch 'main' into jpf/par-docs
jpfairbanks Feb 26, 2024
fba9e1d
Define pmap
lukem12345 Mar 10, 2024
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35 changes: 18 additions & 17 deletions docs/make.jl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@ using Catlab
using Catlab.WiringDiagrams
using AlgebraicPetri
using CairoMakie
using Distributed

# Set Literate.jl config if not being compiled on recognized service.
config = Dict{String,String}()
Expand All @@ -15,21 +16,21 @@ if !(haskey(ENV, "GITHUB_ACTIONS") || haskey(ENV, "GITLAB_CI"))
config["repo_root_url"] = "https://github.com/AlgebraicJulia/Decapodes.jl/blob/main/docs"
end

# const literate_dir = joinpath(@__DIR__, "..", "examples")
# const generated_dir = joinpath(@__DIR__, "src", "examples")
const literate_dir = joinpath(@__DIR__, "..", "examples")
const generated_dir = joinpath(@__DIR__, "src", "examples")

# for (root, dirs, files) in walkdir(literate_dir)
# out_dir = joinpath(generated_dir, relpath(root, literate_dir))
# pmap(files) do file
# f,l = splitext(file)
# if l == ".jl" && !startswith(f, "_")
# Literate.markdown(joinpath(root, file), out_dir;
# config=config, documenter=true, credit=false)
# Literate.notebook(joinpath(root, file), out_dir;
# execute=true, documenter=true, credit=false)
# end
# end
# end
for (root, dirs, files) in walkdir(literate_dir)
out_dir = joinpath(generated_dir, relpath(root, literate_dir))
pmap(files) do file
f,l = splitext(file)
if l == ".jl" && !startswith(f, "_")
Literate.markdown(joinpath(root, file), out_dir;
config=config, documenter=true, credit=false)
Literate.notebook(joinpath(root, file), out_dir;
execute=true, documenter=true, credit=false)
end
end
end

@info "Building Documenter.jl docs"
makedocs(
Expand All @@ -52,9 +53,9 @@ makedocs(
"Glacial Flow" => "ice_dynamics.md",
"Grigoriev Ice Cap" => "grigoriev.md",
"Budyko-Sellers-Halfar" => "budyko_sellers_halfar.md",
# "Examples" => Any[
# "examples/cfd_example.md"
# ],
"Examples" => Any[
"examples/cfd_example.md"
],
"Library Reference" => "api.md"
]
)
Expand Down
4 changes: 2 additions & 2 deletions examples/chemistry/brusselator_bounded.jl
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Expand Up @@ -65,7 +65,7 @@ resolve_overloads!(Brusselator)
to_graphviz(Brusselator)

# TODO: Create square domain of approximately 32x32 vertices.
s = loadmesh(Rectangle_30x10())
s = triangulated_grid(30,10,2,2)
scaling_mat = Diagonal([1/maximum(x->x[1], s[:point]),
1/maximum(x->x[2], s[:point]),
1.0])
Expand Down Expand Up @@ -230,7 +230,7 @@ constants_and_parameters = (
R = R,
F = t -> t ≥ 1.1 ? F₂ : F₁)

tₑ = 21.5e4
tₑ = 21.5e2

@info("Precompiling Solver")
prob = ODEProblem(fₘ, u₀, (0, 1e-4), constants_and_parameters)
Expand Down