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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 352 152

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 23 14

Repositories

Showing 10 of 412 repositories
  • npc_sessions_cache Public

    Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.

    AllenInstitute/npc_sessions_cache’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 20, 2025
  • TEM_config Public
    AllenInstitute/TEM_config’s past year of commit activity
    0 0 1 0 Updated Feb 20, 2025
  • compute_motion_energy Public

    Step 2 of Behavior Video QC pipeline. Loads video Barr files and computes motion energy in 3d and

    AllenInstitute/compute_motion_energy’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 20, 2025
  • AllenInstitute/motion_energy_PCA’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 20, 2025
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 4 BSD-3-Clause 2 68 5 Updated Feb 19, 2025
  • load_behavior_video Public

    First step in behavior video QC pipeline. Loads attached videos, saves gray frames in zarr file, saves metadata.

    AllenInstitute/load_behavior_video’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 19, 2025
  • deep-neurographs Public

    A Python package that utilizes machine learning to correct split mistakes in a fragmented neuron segmentation.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Feb 19, 2025
  • pigeon Public

    A STOMP client with message definitions via Pydantic

    AllenInstitute/pigeon’s past year of commit activity
    Python 0 BSD-3-Clause 1 1 0 Updated Feb 19, 2025
  • AllenInstitute/AllenInstituteTaxonomy’s past year of commit activity
    1 0 4 0 Updated Feb 19, 2025
  • npc_sync Public

    Repackaging of AllenSDK.SyncDataset with extra functionality, compatible with data in the cloud.

    AllenInstitute/npc_sync’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 19, 2025

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