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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 23 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 7 3

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentatio…

    Python 6

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 318 repositories
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity
    Python 5 MIT 4 104 (1 issue needs help) 8 Updated Jan 16, 2025
  • aind-codeocean-utils Public

    Repository to facilitate interfacing with Code Ocean's index

    AllenNeuralDynamics/aind-codeocean-utils’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Jan 16, 2025
  • aind-exaspim-soma-detection Public

    A Python package for detecting somas in ExaSPIM image datasets. Includes tools for image preprocessing and deep learning-based classification and training.

    AllenNeuralDynamics/aind-exaspim-soma-detection’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jan 16, 2025
  • aind-data-schema-models Public

    Data models used in aind-data-schema

    AllenNeuralDynamics/aind-data-schema-models’s past year of commit activity
    Python 0 MIT 2 6 3 Updated Jan 16, 2025
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff’s past year of commit activity
    Python 0 MIT 0 5 1 Updated Jan 16, 2025
  • aind-session Public

    User-friendly tools for accessing paths, metadata and assets related to AIND sessions

    AllenNeuralDynamics/aind-session’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Jan 16, 2025
  • aind-ophys-roicat-session-matching Public
    AllenNeuralDynamics/aind-ophys-roicat-session-matching’s past year of commit activity
    Jupyter Notebook 0 MIT 0 3 0 Updated Jan 16, 2025
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging’s past year of commit activity
    Python 0 0 0 0 Updated Jan 16, 2025
  • harp.device.lickety-split Public

    an ephys-compliant capacitive lick detector

    AllenNeuralDynamics/harp.device.lickety-split’s past year of commit activity
    C++ 0 MIT 0 20 0 Updated Jan 16, 2025
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 23 MIT 17 49 10 Updated Jan 16, 2025
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