Modify run_test.py

AlphaGenes · Jan 26, 2024 · 3e58735 · 3e58735
1 parent 5b14d7a
commit 3e58735
Show file tree

Hide file tree

Showing 2 changed files with 185 additions and 184 deletions.
diff --git a/tests/run_test.py b/tests/run_test.py
@@ -68,7 +68,7 @@ def delete_columns(two_d_list, col_del):
 
 class TestClass:
     path = os.path.join("tests")
-    command = "AlphaImpute2"
+    command = "AlphaImpute2 "
     test_cases = None
     test_file_depend_on_test_cases = None
 
@@ -107,7 +107,7 @@ def generate_command(self):
                 self.command += f"-{key} "
 
         self.command += (
-            f"-out_file {os.path.join(self.output_path, self.output_file_prefix)}"
+            f"-out {os.path.join(self.output_path, self.output_file_prefix)}"
         )
 
     def prepare_path(self):
@@ -150,11 +150,12 @@ def test_one(self):
         self.output_file_to_check = "genotypes"
 
         self.generate_command()
+        print(self.command)
         os.system(self.command)
 
         self.output_file_path = os.path.join(
             self.output_path,
-            f"{self.output_file_prefix}.{self.output_file_to_check}.txt",
+            f"{self.output_file_prefix}.{self.output_file_to_check}",
         )
         self.expected_file_path = os.path.join(
             self.path, f"true_{self.output_file_to_check}.txt"