AlphaPeel is a software package for calling, phasing, and imputing genotype and sequence data in pedigree populations. This program implements single locus peeling, multi locus peeling, and hybrid peeling. A complete description of these methods is given in Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees, Genetics Selection Evolution.
The AlphaPeel.zip file contains executibles for Windows, Linux, and Mac, a manual, and an example dataset.
AlphaPeel is part of a suite of software that our group has developed. It is fully and freely available for all use under the MIT License.
Whalen, A, Ros-Freixedes, R, Wilson, DL, Gorjanc, G, Hickey, JM. (2018). Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees. Genetics Selection Evolution; doi: https://doi.org/10.1186/s12711-018-0438-2