BUILD: Release fluxus 1.0.3

.github/workflows/fluxus-release-pipeline.yaml

@@ -461,6 +461,8 @@ jobs:
     if: (startsWith(github.head_ref, 'dev/') && startsWith(github.base_ref, 'release/')) || startsWith(github.ref, 'refs/heads/release/')
     needs:
       - check_release
+      - veracode_check
+      - unit_tests
       - conda_tox_matrix
     steps:
       - name: Checkout code

.pre-commit-config.yaml

@@ -40,7 +40,7 @@ repos:
         exclude: condabuild/meta.yaml
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.10.0
+    rev: v1.11.0
     hooks:
       - id: mypy
         entry: mypy src/ test/

RELEASE_NOTES.rst

@@ -4,6 +4,21 @@ Release Notes
 *fluxus* 1.0
 ------------
 
+*fluxus* 1.0.3
+~~~~~~~~~~~~~~
+
+- API: Rename methods ``iter_concurrent_conduits`` to ``iter_concurrent_producers``,
+  and ``aiter_concurrent_conduits`` to ``aiter_concurrent_producers``
+- API: Return iterators not lists from :meth:`.SerialTransformer.process` and
+  :meth:`.SerialTransformer.aprocess` for greater flexibility in processing the results
+- API: Removed functions ``iter()`` and ``aiter()`` from class
+  :class:`.SerialTransformer`, to further streamline the API and given they can be
+  easily replaced by repeated calls to :meth:`.SerialTransformer.process` and
+  :meth:`.SerialTransformer.aprocess`
+- FIX: Updated logic for iterating over concurrent producers and transformers to ensure
+  shared conduits never run more than once
+
+
 *fluxus* 1.0.2
 ~~~~~~~~~~~~~~
 

src/fluxus/_passthrough.py

@@ -70,6 +70,11 @@ def final_conduit(self) -> Never:
         """[see superclass]"""
         raise NotImplementedError("Final conduit is not defined for passthroughs")
 
+    @property
+    def chained_conduits(self) -> Never:
+        """[see superclass]"""
+        raise NotImplementedError("Chained conduits are not defined for passthroughs")
+
     def get_final_conduits(self) -> Iterator[Never]:
         """
         Returns an empty iterator since passthroughs do not define a final conduit.
@@ -91,6 +96,16 @@ def get_connections(self, *, ingoing: Collection[SerialConduit[Any]]) -> Never:
 
         :param ingoing: the ingoing conduits (ignored)
         :return: nothing; passthroughs do not define connections
-        :raises NotImplementedError: passthroughs do not define connections
+        :raises NotImplementedError: connections are not defined for passthroughs
         """
         raise NotImplementedError("Connections are not defined for passthroughs")
+
+    def get_isolated_conduits(self) -> Never:
+        """
+        Fails with a :class:`NotImplementedError` since passthroughs are transparent in
+        flows and therefore isolated conduits are not defined.
+
+        :return: nothing; passthroughs do not define isolated conduits
+        :raises NotImplementedError: isolated conduits are not defined for passthroughs
+        """
+        raise NotImplementedError("Isolated conduits are not defined for passthroughs")

src/fluxus/_transformer.py

@@ -23,12 +23,10 @@
 import logging
 from abc import ABCMeta, abstractmethod
 from collections.abc import AsyncIterator, Iterator
-from typing import Any, Generic, TypeVar, final
+from typing import Generic, TypeVar, final
 
 from pytools.asyncio import arun, iter_async_to_sync
-from pytools.typing import issubclass_generic
 
-from ._passthrough import Passthrough
 from .core import AtomicConduit
 from .core.transformer import SerialTransformer
 
@@ -111,30 +109,3 @@ def atransform(
         :param source_product: the existing product to use as input
         :return: the new product
         """
-
-
-#
-# Auxiliary functions
-#
-
-
-def _validate_concurrent_passthrough(
-    conduit: SerialTransformer[Any, Any] | Passthrough
-) -> None:
-    """
-    Validate that the given conduit is valid as a concurrent conduit with a passthrough.
-
-    To be valid, its input type must be a subtype of its product type.
-
-    :param conduit: the conduit to validate
-    """
-
-    if not (
-        isinstance(conduit, Passthrough)
-        or issubclass_generic(conduit.input_type, conduit.product_type)
-    ):
-        raise TypeError(
-            "Conduit is not a valid concurrent conduit with a passthrough because its "
-            f"input type {conduit.input_type} is not a subtype of its product type "
-            f"{conduit.product_type}:\n{conduit}"
-        )

src/fluxus/core/_base.py

@@ -25,13 +25,18 @@
 
 import logging
 from abc import ABCMeta, abstractmethod
-from collections.abc import AsyncIterable, Collection, Iterable, Iterator
-from typing import Any, Generic, TypeVar, cast
-
-from typing_extensions import Self
+from collections.abc import (
+    AsyncIterable,
+    AsyncIterator,
+    Awaitable,
+    Collection,
+    Iterable,
+    Iterator,
+)
+from typing import Any, Generic, TypeVar, cast, final
 
 from pytools.api import inheritdoc
-from pytools.typing import get_common_generic_base, issubclass_generic
+from pytools.typing import issubclass_generic
 
 from ._conduit import Conduit, SerialConduit
 
@@ -65,17 +70,11 @@ class Source(Conduit[T_Product_ret], Generic[T_Product_ret], metaclass=ABCMeta):
     """
 
     @property
+    @abstractmethod
     def product_type(self) -> type[T_Product_ret]:
         """
         The type of the products produced by this conduit.
         """
-        from .. import Passthrough
-
-        return get_common_generic_base(
-            cast(SerialSource[T_Product_ret], source).product_type
-            for source in self.iter_concurrent_conduits()
-            if not isinstance(source, Passthrough)
-        )
 
 
 class Processor(
@@ -100,7 +99,7 @@ def input_type(self) -> type[T_SourceProduct_arg]:
     @abstractmethod
     def process(
         self, input: Iterable[T_SourceProduct_arg]
-    ) -> list[T_Output_ret] | T_Output_ret:
+    ) -> Iterator[T_Output_ret] | T_Output_ret:
         """
         Generate new products from the given input.
 
@@ -109,16 +108,17 @@ def process(
         """
 
     @abstractmethod
-    async def aprocess(
+    def aprocess(
         self, input: AsyncIterable[T_SourceProduct_arg]
-    ) -> list[T_Output_ret] | T_Output_ret:
+    ) -> AsyncIterator[T_Output_ret] | Awaitable[T_Output_ret]:
         """
         Generate new products asynchronously from the given input.
 
         :param input: the input products
         :return: the generated output or outputs
         """
 
+    @abstractmethod
     def is_valid_source(
         self,
         source: SerialConduit[T_SourceProduct_arg],
@@ -133,20 +133,6 @@ def is_valid_source(
         :return: ``True`` if the given conduit is valid source for this conduit,
             ``False`` otherwise
         """
-        from .. import Passthrough
-
-        if not isinstance(source, SerialSource):
-            return False
-
-        ingoing_product_type = source.product_type
-        return all(
-            issubclass_generic(
-                ingoing_product_type,
-                cast(Self, processor).input_type,
-            )
-            for processor in self.iter_concurrent_conduits()
-            if not isinstance(processor, Passthrough)
-        )
 
 
 class SerialSource(
@@ -178,6 +164,17 @@ class SerialProcessor(
     A processor that processes products sequentially.
     """
 
+    @final
+    def is_valid_source(
+        self,
+        source: SerialConduit[T_SourceProduct_arg],
+    ) -> bool:
+        """[see superclass]"""
+        if not isinstance(source, SerialSource):
+            return False
+
+        return issubclass_generic(source.product_type, self.input_type)
+
     def get_connections(
         self, *, ingoing: Collection[SerialConduit[Any]]
     ) -> Iterator[tuple[SerialConduit[Any], SerialConduit[Any]]]:

src/fluxus/core/_chained_base_.py

@@ -68,26 +68,26 @@ def is_chained(self) -> bool:
 
     @property
     @abstractmethod
-    def _source(self) -> Source[T_SourceProduct_ret]:
+    def source(self) -> Source[T_SourceProduct_ret]:
         """
         The source producer of this conduit.
         """
 
     @property
     @abstractmethod
-    def _processor(self) -> Processor[T_SourceProduct_ret, T_Output_ret]:
+    def processor(self) -> Processor[T_SourceProduct_ret, T_Output_ret]:
         """
         The second conduit in this chained conduit, processing the output of the
-        :attr:`._source` conduit.
+        :attr:`.source` conduit.
         """
 
     def get_final_conduits(self) -> Iterator[SerialConduit[T_Output_ret]]:
         """[see superclass]"""
-        if self._processor._has_passthrough:
+        if self.processor._has_passthrough:
             yield from cast(
-                Iterator[SerialConduit[T_Output_ret]], self._source.get_final_conduits()
+                Iterator[SerialConduit[T_Output_ret]], self.source.get_final_conduits()
             )
-        yield from self._processor.get_final_conduits()
+        yield from self.processor.get_final_conduits()
 
     def get_connections(
         self, *, ingoing: Collection[SerialConduit[Any]]
@@ -97,8 +97,8 @@ def get_connections(
 
         :return: an iterable of connections
         """
-        source = self._source
-        processor = self._processor
+        source = self.source
+        processor = self.processor
 
         # We first yield all connections from within the source
         yield from source.get_connections(ingoing=ingoing)
@@ -113,11 +113,16 @@ def get_connections(
         # Then we get all connections of the processor, including ingoing connections
         yield from processor.get_connections(ingoing=processor_ingoing)
 
+    def get_isolated_conduits(self) -> Iterator[SerialConduit[T_Output_ret]]:
+        """[see superclass]"""
+        # Chained conduits are never isolated
+        yield from ()
+
     def to_expression(self, *, compact: bool = False) -> Expression:
         """[see superclass]"""
-        return self._source.to_expression(
+        return self.source.to_expression(
             compact=compact
-        ) >> self._processor.to_expression(compact=compact)
+        ) >> self.processor.to_expression(compact=compact)
 
 
 class _SerialChainedConduit(
@@ -132,13 +137,13 @@ class _SerialChainedConduit(
 
     @property
     @abstractmethod
-    def _source(self) -> SerialSource[T_SourceProduct_ret]:
+    def source(self) -> SerialSource[T_SourceProduct_ret]:
         """[see superclass]"""
 
     @property
     def chained_conduits(self) -> Iterator[SerialConduit[Any]]:
         """
         The chained conduits in the flow leading up to this conduit.
         """
-        yield from self._source.chained_conduits
+        yield from self.source.chained_conduits
         yield self.final_conduit

src/fluxus/core/_concurrent.py

@@ -26,8 +26,6 @@
 
 from typing_extensions import Self
 
-from pytools.api import inheritdoc
-
 from ._conduit import Conduit
 
 log = logging.getLogger(__name__)
@@ -52,7 +50,6 @@
 #
 
 
-@inheritdoc(match="[see superclass]")
 class ConcurrentConduit(
     Conduit[T_Product_ret], Generic[T_Product_ret], metaclass=ABCMeta
 ):
@@ -71,11 +68,6 @@ def is_concurrent(self) -> bool:
         """
         return True
 
-    @property
-    def is_chained(self) -> bool:
-        """[see superclass]"""
-        return any(conduit.is_chained for conduit in self.iter_concurrent_conduits())
-
     @property
     def final_conduit(self) -> Self:
         """