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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,128 +1,150 @@ | ||
| from fabric.context_managers import prefix | ||
| from fabric.api import * | ||
| from fabric.contrib.files import exists | ||
| from getpass import getpass | ||
|
|
||
| BIOSTAR_HOME = "/home/www/sites/biostar-central" | ||
| VIRTUALENV_WRAPPER = "source /usr/local/bin/virtualenvwrapper.sh" | ||
| CLONE_URL = "https://github.com/ialbert/biostar-central.git" | ||
| BRANCH = "master" | ||
|
|
||
| def setenv(): | ||
| # The python environment that the system needs. | ||
| env.biostar_home = BIOSTAR_HOME | ||
| env.wrapper = VIRTUALENV_WRAPPER | ||
| env.biostar_clone = CLONE_URL | ||
| env.biostar_branch = BRANCH | ||
|
|
||
| # The is the main environment that will be applied to each command. | ||
| # This is the prefix invoked when opertating on the deployed site. | ||
| env.biostar_live = "%(biostar_home)s/live" % env | ||
| env.biostar_env = "%(biostar_live)s/deploy.env" % env | ||
| env.workon = "source /usr/local/bin/virtualenvwrapper.sh && workon biostar && cd %(biostar_home)s && source %(biostar_env)s" % env | ||
|
|
||
| def usegalaxy(user="www"): | ||
| "Sets the environment for the biostar galaxy" | ||
| setenv() | ||
| env.hosts.append('biostar.usegalaxy.org') | ||
| env.user = user | ||
|
|
||
| def metastars(user="www"): | ||
| "Sets the environment for the biostar galaxy" | ||
| setenv() | ||
| env.hosts.append('metastars.org') | ||
| env.user = user | ||
|
|
||
| def biostars(user="www"): | ||
| "Sets the environment for the biostar galaxy" | ||
| setenv() | ||
| env.hosts.append('biostars.org') | ||
| env.user = user | ||
|
|
||
| def test_site(user='www'): | ||
| setenv() | ||
| env.hosts.append('test.biostars.org') | ||
| env.user = user | ||
|
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||
| def hostname(): | ||
| run("hostname") | ||
|
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||
| def copy_config(): | ||
| # Create a default environment. | ||
| if not exists(env.biostar_env): | ||
| put("conf/defaults.env", env.biostar_env) | ||
|
|
||
| # Logging into this directory. | ||
| if not exists("%(biostar_live)s/logs" % env): | ||
| run("mkdir -p %(biostar_live)s/logs" % env) | ||
|
|
||
| # Customize the deployment environment. | ||
| with prefix(env.workon): | ||
|
|
||
| # Copy over all scripts | ||
| scripts = [ | ||
| "celery.beat.sh", | ||
| "celery.worker.sh", | ||
| "gunicorn.start.sh", | ||
| ] | ||
| for name in scripts: | ||
| if not exists("live/%s" % name): | ||
| put("conf/server/%s" % name, env.biostar_live) | ||
| run("chmod +x %(biostar_live)s/*.sh" % env) | ||
|
|
||
| if not exists("live/deploy.py"): | ||
| put("biostar/settings/deploy.py", env.biostar_live) | ||
|
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||
| if not exists("live/biostar.nginx.conf"): | ||
| put("conf/server/biostar.nginx.conf", env.biostar_live) | ||
| sudo("ln -fs %(biostar_live)s/biostar.nginx.conf /etc/nginx/sites-enabled/" % env) | ||
|
|
||
| if not exists("live/biostar.supervisor.conf"): | ||
| put("conf/server/biostar.supervisor.conf", env.biostar_live) | ||
| sudo("ln -fs %(biostar_live)s/biostar.supervisor.conf /etc/supervisor/conf.d/" % env) | ||
|
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||
|
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||
| def create_biostar(): | ||
| "Create the biostar directories" | ||
|
|
||
| # Create directories. | ||
| run('mkdir -p %(biostar_home)s' % env) | ||
|
|
||
| # Clone from repository. | ||
| run("git clone %(biostar_clone)s %(biostar_home)s" % env) | ||
|
|
||
| with cd(env.biostar_home): | ||
| run("git checkout %(biostar_branch)s" % env) | ||
|
|
||
| with prefix(env.wrapper): | ||
| run("mkvirtualenv biostar") | ||
| run("workon biostar && pip install -r %(biostar_home)s/conf/requirements/all.txt" % env) | ||
|
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||
| def restart(): | ||
| sudo("service nginx restart") | ||
| sudo("supervisorctl restart biostar") | ||
| sudo("supervisorctl restart worker beat") | ||
|
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||
| def init_biostar(): | ||
| with prefix(env.workon): | ||
| run("./biostar.sh init") | ||
| run("./biostar.sh index") | ||
|
|
||
| def test(): | ||
| with prefix(env.workon): | ||
| run("./biostar.sh test") | ||
|
|
||
| def migrate(): | ||
| # Clone from repository. | ||
| with prefix(env.workon): | ||
| run("git pull") | ||
| run("python manage.py migrate") | ||
|
|
||
| def pull(): | ||
| # Perform a pull. | ||
| with prefix(env.workon): | ||
| run("git pull") | ||
| #run("./biostar.sh test") | ||
| run("python manage.py collectstatic --noinput") | ||
|
|
||
|
|
||
| from fabric.context_managers import prefix | ||
| from fabric.api import * | ||
| from fabric.contrib.files import exists | ||
| from getpass import getpass | ||
|
|
||
| BIOSTAR_HOME = "/home/www/sites/biostar-central" | ||
| VIRTUALENV_WRAPPER = "source /usr/local/bin/virtualenvwrapper.sh" | ||
| CLONE_URL = "https://github.com/ialbert/biostar-central.git" | ||
| BRANCH = "production" | ||
|
|
||
| def setenv(): | ||
| # The python environment that the system needs. | ||
| env.biostar_home = BIOSTAR_HOME | ||
| env.wrapper = VIRTUALENV_WRAPPER | ||
| env.biostar_clone = CLONE_URL | ||
| env.biostar_branch = BRANCH | ||
|
|
||
| # The is the main environment that will be applied to each command. | ||
| # This is the prefix invoked when opertating on the deployed site. | ||
| env.biostar_live = "%(biostar_home)s/live" % env | ||
| env.biostar_env = "%(biostar_live)s/deploy.env" % env | ||
| env.workon = "source /usr/local/bin/virtualenvwrapper.sh && workon biostar && cd %(biostar_home)s && source %(biostar_env)s" % env | ||
|
|
||
| def usegalaxy(user="www"): | ||
| "Sets the environment for the biostar galaxy" | ||
| setenv() | ||
| env.hosts.append('biostar.usegalaxy.org') | ||
| env.user = user | ||
|
|
||
| def metastars(user="www"): | ||
| "Sets the environment for the biostar galaxy" | ||
| setenv() | ||
| env.hosts.append('metastars.org') | ||
| env.user = user | ||
|
|
||
| def biostars(user="www"): | ||
| "Sets the environment for the biostar galaxy" | ||
| setenv() | ||
| env.hosts.append('biostars.org') | ||
| env.user = user | ||
|
|
||
| def test_site(user='www'): | ||
| setenv() | ||
| env.hosts.append('test.biostars.org') | ||
| env.user = user | ||
|
|
||
| def hostname(): | ||
| run("hostname") | ||
|
|
||
| def copy_config(): | ||
| # Create a default environment. | ||
| if not exists(env.biostar_env): | ||
| put("conf/defaults.env", env.biostar_env) | ||
|
|
||
| # Logging into this directory. | ||
| if not exists("%(biostar_live)s/logs" % env): | ||
| run("mkdir -p %(biostar_live)s/logs" % env) | ||
|
|
||
| # Customize the deployment environment. | ||
| with prefix(env.workon): | ||
|
|
||
| # Copy over all scripts | ||
| scripts = [ | ||
| "celery.beat.sh", | ||
| "celery.worker.sh", | ||
| "gunicorn.start.sh", | ||
| ] | ||
| for name in scripts: | ||
| if not exists("live/%s" % name): | ||
| put("conf/server/%s" % name, env.biostar_live) | ||
| run("chmod +x %(biostar_live)s/*.sh" % env) | ||
|
|
||
| if not exists("live/deploy.py"): | ||
| put("biostar/settings/deploy.py", env.biostar_live) | ||
|
|
||
| if not exists("live/biostar.nginx.conf"): | ||
| put("conf/server/biostar.nginx.conf", env.biostar_live) | ||
| sudo("ln -fs %(biostar_live)s/biostar.nginx.conf /etc/nginx/sites-enabled/" % env) | ||
|
|
||
| if not exists("live/biostar.supervisor.conf"): | ||
| put("conf/server/biostar.supervisor.conf", env.biostar_live) | ||
| sudo("ln -fs %(biostar_live)s/biostar.supervisor.conf /etc/supervisor/conf.d/" % env) | ||
|
|
||
|
|
||
| def create_directories(): | ||
| "Create the biostar directories" | ||
|
|
||
| # Create directories. | ||
| run('mkdir -p %(biostar_home)s' % env) | ||
|
|
||
| # Clone from repository. | ||
| run("git clone %(biostar_clone)s %(biostar_home)s" % env) | ||
|
|
||
| with cd(env.biostar_home): | ||
| run("git checkout %(biostar_branch)s" % env) | ||
|
|
||
| with prefix(env.wrapper): | ||
| run("mkvirtualenv biostar") | ||
| run("workon biostar && pip install -r %(biostar_home)s/conf/requirements/all.txt" % env) | ||
|
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||
|
|
||
| def restart(): | ||
| """A full restart""" | ||
| sudo("service nginx restart") | ||
| sudo("supervisorctl restart biostar") | ||
| sudo("supervisorctl restart worker beat") | ||
|
|
||
|
|
||
| def init(): | ||
| """Initialize the website""" | ||
| with prefix(env.workon): | ||
| run("./biostar.sh init") | ||
|
|
||
|
|
||
| def index(): | ||
| """Index the content""" | ||
| with prefix(env.workon): | ||
| run("./biostar.sh index") | ||
|
|
||
|
|
||
| def test(): | ||
| """Run test""" | ||
| with prefix(env.workon): | ||
| run("./biostar.sh test") | ||
|
|
||
|
|
||
| def migrate(): | ||
| """Migrate from main""" | ||
| with prefix(env.workon): | ||
| run("python manage.py migrate") | ||
|
|
||
|
|
||
| def pull(): | ||
| """Perform a pull on remote""" | ||
| with prefix(env.workon): | ||
| run("git pull") | ||
|
|
||
| def pip(): | ||
| """Reinstall requirments""" | ||
| with prefix(env.workon): | ||
| run("pip install -r conf/requirements/base.txt") | ||
|
|
||
|
|
||
| def deploy(): | ||
| """A full deploy""" | ||
| pull() | ||
| pip() | ||
| init() | ||
| restart() | ||
|
|