Allow relative file paths #257
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PR Testing: Run the pipeline with relative paths for the following parameters: meta_path, submission_config, ref_fasta_path, ref_gff_path, and bakta_db_path. Example command: |
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Description
Changes allow for command line parameters to be provided as relative paths.
Checklist
Go Through Checklist Below and Place A ✔️ (X Inside the Box) if Completed
General Checks
Have you run appropriate tests (unit/integration/end-to-end) to check logic across run environments (Conda/Docker/Singularity on Scicomp/AWS/NF Tower/Local)?
For each relevant configuration: