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22 Open 118 Closed
22 Open 118 Closed
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Issues list

[External] [Feature] Update nextflow_schema.json to include a help message. enhancement New feature or request
#255 opened Jan 17, 2025 by RamiyapriyaS
1 task done
@RamiyapriyaS
[Internal] [Bug] Resume flag re-runs submission even if completed bug Something isn't working
#254 opened Jan 16, 2025 by jessicarowell v4.2.0
1
@jessicarowell
[Internal] [Feature] Allow antibiogram input for BioSample enhancement New feature or request
#251 opened Jan 14, 2025 by jessicarowell
1 task done
v4.3.0
@jessicarowell
[Internal] [Feature] Update README with more detail on parameters enhancement New feature or request
#250 opened Jan 11, 2025 by jessicarowell
1 task done
[Internal] [Bug] Enable date correction and demographic info scrubbing params bug Something isn't working
#248 opened Jan 11, 2025 by jessicarowell
1
@jessicarowell
[Internal] [Bug] Update general_utility.py bug Something isn't working
#246 opened Jan 8, 2025 by jessicarowell
1
[Internal] [Feature] Rework update submissions to track SAMN IDs for BioSample updates enhancement New feature or request
#245 opened Jan 8, 2025 by jessicarowell
1 task done
v4.2.0
1
@jessicarowell
1
[Internal] [Bug] Conflicts running TOSTADAS on AWS bug Something isn't working
#235 opened Dec 18, 2024 by jessicarowell
[Internal] [Bug] UnboundLocalError: local variable 'sra_submission' referenced before assignment bug Something isn't working
#231 opened Dec 11, 2024 by jessicarowell
1 task done
v4.2.0
1
@jessicarowell
3
[Internal] [Feature] Support for GEO submissions enhancement New feature or request
#229 opened Dec 9, 2024 by jessicarowell
1 task done
@jessicarowell
[Internal] [Bug] 'Not a valid path value:' for relative paths on command line bug Something isn't working
#227 opened Dec 9, 2024 by jessicarowell
1 task done
v4.1.3
1
@RamiyapriyaS
1
[Internal] [Feature] Fix tests (for Github Actions) enhancement New feature or request
#220 opened Nov 14, 2024 by jessicarowell
@jessicarowell
[Internal] [Bug] Table2asn error on test data user-provided annotations: duplicate Bioseq id bug Something isn't working
#217 opened Nov 13, 2024 by jessicarowell
1 task done
@kyleoconnell
1
[Internal] [Feature] Refactor to bulk-submit samples enhancement New feature or request
#213 opened Nov 8, 2024 by jessicarowell
@jessicarowell
[Internal] [Bug] Implement logging after the batch submission code is written bug Something isn't working
#212 opened Nov 7, 2024 by jessicarowell
1 task done
@jessicarowell
[Internal] [Feature] Write a new update_submission.py script enhancement New feature or request
#211 opened Nov 7, 2024 by jessicarowell
1 task done
v4.2.0
1
@jessicarowell
[Internal] [Feature] Cloud support for submissions enhancement New feature or request
#204 opened Oct 4, 2024 by jessicarowell
1 task done
v4.3.0
@jessicarowell
[External] [Bug] CWE-798 Security Vulnerability - Plain Text Password bug Something isn't working
#202 opened Oct 1, 2024 by thomasphung
1 task done
[Internal] [Feature] Make these custom field validations "smarter" enhancement New feature or request
#198 opened Apr 11, 2024 by jessicarowell
1 task done
@jessicarowell
[Internal] [Feature] Refactor to support nanopore data enhancement New feature or request
#172 opened Feb 28, 2024 by jessicarowell
1 task done
@jessicarowell
[Internal] [Test] Add Separate CI For Dev Branch implement testing
#89 opened Dec 6, 2023 by ankushkgupta2
1 task done
@ankushkgupta2
1
[Internal] [Feature] Add Singularity to C/I enhancement New feature or request testing
#56 opened Jun 22, 2023 by ankushkgupta2
1 task done
@ankushkgupta2
ProTip! no:milestone will show everything without a milestone.