Add conditional check for codacy

.github/workflows/codacy-coverage-reporter.yml

@@ -3,15 +3,22 @@ name: Codacy Coverage Reporter
 on: [push, pull_request]
 
 jobs:
-  codacy-coverage-reporter:
+  build:
     runs-on: ubuntu-latest
-    name: codacy-coverage-reporter
-    environment: codacy
     steps:
-      - uses: actions/checkout@v2
-      - name: Run codacy-coverage-reporter
+      - name: Check secret presence
+        id: check_secret
+        run: |
+          echo "is_set=false" >> $GITHUB_OUTPUT
+          if [ ! -z "${{ secrets.CODACY_PROJECT_TOKEN }}" ]; then
+            echo "is_set=true" >> $GITHUB_OUTPUT
+          fi
+
+      - name: Conditional run codacy-coverage-reporter
+        if: steps.check_secret.outputs.is_set == 'true'
         uses: codacy/[email protected]
         with:
+          project-token: ${{ secrets.CODACY_PROJECT_TOKEN }}
           coverage-reports: coverage.xml
         env:
           CODACY_PROJECT_TOKEN: ${{ secrets.CODACY_PROJECT_TOKEN }}

.github/workflows/codecov.yml

@@ -1,32 +1,33 @@
-name: Codecov
+name: Python application
 
 on: [push, pull_request]
 
 jobs:
-  run:
+  build:
+    name: Codecov
     runs-on: ubuntu-latest
-    env:
-      OS: ubuntu-latest
-      PYTHON: '3.10'
+
     steps:
-    - uses: actions/checkout@master
-    - name: Setup Python
-      uses: actions/setup-python@master
+    - uses: actions/checkout@v4
+    - uses: conda-incubator/setup-miniconda@v3
       with:
-        python-version: 3.10
-    - name: Generate coverage report
+        python-version: 3.11
+        mamba-version: "*"
+        miniforge-version: "latest"
+        channels: conda-forge,defaults
+        channel-priority: true
+        activate-environment: anaconda-client-env
+    - shell: bash -el {0}
+      name: Install dependencies
+      run: |
+        mamba install -y nbmake pytest-xdist line_profiler  # add'l packages for notebook tests.
+        mamba install --file requirements.txt --file requirements-extra.txt
+        python -m pip install -e .
+    - shell: bash -el {0}
+      name: Test with pytest and collect coverage
       run: |
-        pip install pytest
-        pip install pytest-cov
         pytest --cov=./ --cov-report=xml
     - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v4
-      with:
-        directory: ./coverage/reports/
-        env_vars: OS,PYTHON
-        fail_ci_if_error: true
-        files: ./coverage1.xml,./coverage2.xml,!./cache
-        flags: unittests
-        name: codecov-umbrella
-        token: ${{ secrets.CODECOV_TOKEN }}
-        verbose: true
+      uses: codecov/codecov-action@v3
+      env:
+        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}