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github-action committed Dec 17, 2024
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73 changes: 73 additions & 0 deletions log-files/2024-12-17_09-17-28/Test1D3DLinearEllipticSolver_valgrind.txt
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==25058== Memcheck, a memory error detector
==25058== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==25058== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==25058== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info
==25058== Parent PID: 24024
==25058==
==25058==
==25058== FILE DESCRIPTORS: 9 open (3 std) at exit.
==25058== Open file descriptor 12:
==25058== at 0x84EF07D: pipe (pipe.c:29)
==25058== by 0x104E607D: ???
==25058== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25058== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25058== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25058== by 0x6AB4D38: PetscInitialize (pinit.c:924)
==25058== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25058== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25058== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25058== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25058== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25058== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25058== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25058== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==25058==
==25058== Open file descriptor 8: /dev/shm/open_mpi.0000
==25058== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39)
==25058== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==25058== by 0x7D43822: ???
==25058== by 0x7D4396F: ???
==25058== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25058== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25058== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25058== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25058== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25058== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25058== by 0x6AB4D38: PetscInitialize (pinit.c:924)
==25058== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25058== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25058== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25058== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25058== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25058== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25058== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25058== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==25058==
==25058== Open file descriptor 158:
==25058== <inherited from parent>
==25058==
==25058== Open file descriptor 155:
==25058== <inherited from parent>
==25058==
==25058== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt
==25058== <inherited from parent>
==25058==
==25058== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==25058== <inherited from parent>
==25058==
==25058==
==25058== HEAP SUMMARY:
==25058== in use at exit: 618,270 bytes in 8,238 blocks
==25058== total heap usage: 51,120 allocs, 42,882 frees, 1,339,259,766 bytes allocated
==25058==
==25058== LEAK SUMMARY:
==25058== definitely lost: 0 bytes in 0 blocks
==25058== indirectly lost: 0 bytes in 0 blocks
==25058== possibly lost: 0 bytes in 0 blocks
==25058== still reachable: 24 bytes in 2 blocks
==25058== suppressed: 618,246 bytes in 8,236 blocks
==25058== Reachable blocks (those to which a pointer was found) are not shown.
==25058== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==25058==
==25058== For lists of detected and suppressed errors, rerun with: -s
==25058== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)
73 changes: 73 additions & 0 deletions log-files/2024-12-17_09-17-28/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
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==43762== Memcheck, a memory error detector
==43762== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==43762== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==43762== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info
==43762== Parent PID: 24024
==43762==
==43762==
==43762== FILE DESCRIPTORS: 9 open (3 std) at exit.
==43762== Open file descriptor 12:
==43762== at 0xA7CE07D: pipe (pipe.c:29)
==43762== by 0x1433707D: ???
==43762== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43762== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43762== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43762== by 0xAB57D38: PetscInitialize (pinit.c:924)
==43762== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43762== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43762== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43762== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43762== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43762== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43762== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43762== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43762==
==43762== Open file descriptor 8: /dev/shm/open_mpi.0000
==43762== at 0xA7D2A1C: __open_nocancel (open64_nocancel.c:39)
==43762== by 0xA756BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==43762== by 0xA0EF822: ???
==43762== by 0xA0EF96F: ???
==43762== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43762== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43762== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43762== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43762== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43762== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43762== by 0xAB57D38: PetscInitialize (pinit.c:924)
==43762== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43762== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43762== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43762== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43762== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43762== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43762== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43762== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43762==
==43762== Open file descriptor 158:
==43762== <inherited from parent>
==43762==
==43762== Open file descriptor 155:
==43762== <inherited from parent>
==43762==
==43762== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
==43762== <inherited from parent>
==43762==
==43762== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==43762== <inherited from parent>
==43762==
==43762==
==43762== HEAP SUMMARY:
==43762== in use at exit: 618,759 bytes in 8,244 blocks
==43762== total heap usage: 319,598 allocs, 311,354 frees, 1,398,098,507 bytes allocated
==43762==
==43762== LEAK SUMMARY:
==43762== definitely lost: 0 bytes in 0 blocks
==43762== indirectly lost: 0 bytes in 0 blocks
==43762== possibly lost: 0 bytes in 0 blocks
==43762== still reachable: 24 bytes in 2 blocks
==43762== suppressed: 618,735 bytes in 8,242 blocks
==43762== Reachable blocks (those to which a pointer was found) are not shown.
==43762== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==43762==
==43762== For lists of detected and suppressed errors, rerun with: -s
==43762== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 34)
73 changes: 73 additions & 0 deletions log-files/2024-12-17_09-17-28/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,73 @@
==26299== Memcheck, a memory error detector
==26299== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==26299== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==26299== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info
==26299== Parent PID: 24024
==26299==
==26299==
==26299== FILE DESCRIPTORS: 9 open (3 std) at exit.
==26299== Open file descriptor 12:
==26299== at 0xF80107D: pipe (pipe.c:29)
==26299== by 0x196BC07D: ???
==26299== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26299== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26299== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26299== by 0x1012FD38: PetscInitialize (pinit.c:924)
==26299== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26299== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26299== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26299== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26299== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26299== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26299== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26299== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26299==
==26299== Open file descriptor 8: /dev/shm/open_mpi.0000
==26299== at 0xF805A1C: __open_nocancel (open64_nocancel.c:39)
==26299== by 0xF789BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==26299== by 0xF13E822: ???
==26299== by 0xF13E96F: ???
==26299== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26299== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26299== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26299== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26299== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26299== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26299== by 0x1012FD38: PetscInitialize (pinit.c:924)
==26299== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26299== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26299== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26299== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26299== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26299== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26299== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26299== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26299==
==26299== Open file descriptor 158:
==26299== <inherited from parent>
==26299==
==26299== Open file descriptor 155:
==26299== <inherited from parent>
==26299==
==26299== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
==26299== <inherited from parent>
==26299==
==26299== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==26299== <inherited from parent>
==26299==
==26299==
==26299== HEAP SUMMARY:
==26299== in use at exit: 618,366 bytes in 8,239 blocks
==26299== total heap usage: 1,124,534 allocs, 1,116,295 frees, 1,415,928,592 bytes allocated
==26299==
==26299== LEAK SUMMARY:
==26299== definitely lost: 0 bytes in 0 blocks
==26299== indirectly lost: 0 bytes in 0 blocks
==26299== possibly lost: 0 bytes in 0 blocks
==26299== still reachable: 56 bytes in 3 blocks
==26299== suppressed: 618,310 bytes in 8,236 blocks
==26299== Reachable blocks (those to which a pointer was found) are not shown.
==26299== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==26299==
==26299== For lists of detected and suppressed errors, rerun with: -s
==26299== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)
73 changes: 73 additions & 0 deletions log-files/2024-12-17_09-17-28/TestAbstractAnalyticJacobian_valgrind.txt
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,73 @@
==24974== Memcheck, a memory error detector
==24974== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==24974== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==24974== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info
==24974== Parent PID: 24024
==24974==
==24974==
==24974== FILE DESCRIPTORS: 9 open (3 std) at exit.
==24974== Open file descriptor 12:
==24974== at 0x4F1007D: pipe (pipe.c:29)
==24974== by 0xB1EE07D: ???
==24974== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24974== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24974== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24974== by 0x5308D38: PetscInitialize (pinit.c:924)
==24974== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24974== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24974== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24974== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24974== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24974== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24974== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24974== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==24974==
==24974== Open file descriptor 8: /dev/shm/open_mpi.0000
==24974== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39)
==24974== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==24974== by 0x4B76822: ???
==24974== by 0x4B7696F: ???
==24974== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24974== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24974== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24974== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24974== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24974== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24974== by 0x5308D38: PetscInitialize (pinit.c:924)
==24974== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24974== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24974== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24974== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24974== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24974== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24974== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24974== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==24974==
==24974== Open file descriptor 158:
==24974== <inherited from parent>
==24974==
==24974== Open file descriptor 155:
==24974== <inherited from parent>
==24974==
==24974== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt
==24974== <inherited from parent>
==24974==
==24974== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==24974== <inherited from parent>
==24974==
==24974==
==24974== HEAP SUMMARY:
==24974== in use at exit: 617,934 bytes in 8,238 blocks
==24974== total heap usage: 45,031 allocs, 36,793 frees, 1,338,170,610 bytes allocated
==24974==
==24974== LEAK SUMMARY:
==24974== definitely lost: 0 bytes in 0 blocks
==24974== indirectly lost: 0 bytes in 0 blocks
==24974== possibly lost: 0 bytes in 0 blocks
==24974== still reachable: 24 bytes in 2 blocks
==24974== suppressed: 617,910 bytes in 8,236 blocks
==24974== Reachable blocks (those to which a pointer was found) are not shown.
==24974== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==24974==
==24974== For lists of detected and suppressed errors, rerun with: -s
==24974== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)
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